Table 3.
Comparison of differential isoform regulation between the three groups. The genes in bold font are those shared by two pairwise comparisons. The numbers in parenthesis are the number of events considered for the particular group comparison
| AS types | L vs. Zero | O vs. Zero | L vs. O |
|---|---|---|---|
| A3SS (# of events) | (7244) | (7143) | (7239) |
| C8orf22 | ANKRD11 | BMP1 | |
| CLSPN | C11orf48 | NFAT5 | |
| COBLL1 | CNOT2 | OCEL1 | |
| DAK | GNB2L1 | ORMDL1 | |
| JOSD1 | SETMAR | ST5 | |
| OCEL1 | YWHAB | ZNF84 | |
| PIH1D1 | ZNF587 | ||
| A5SS (# of events) | (5399) | (5350) | (5407) |
| C17orf70 | ANGPT1 | HILPDA | |
| MTMR2 | CLEC2D | NBPF11 | |
| NOC2L | LAMA4 | NDUFV2 | |
| RP5-1198O20.4 | NAA60 | NT5C | |
| SMARCC2 | SLC50A1 | OXLD1 | |
| TWF1 | TYSND1 | RP4-583P15.15 | |
| ZNF30 | SRRM1 | ||
| TBC1D7 | |||
| TYSND1 | |||
| VPS52 | |||
| chr1:32336239:32335947 | |||
| MXE (# of events) | (4959) | (4946) | (5006) |
| CNOT1 | CNOT1 | AKIRIN1 | |
| DBNL | EIF4G2 | DDHD2 | |
| DPY30 | HMGN1 | DEK | |
| MPPE1 | PTRH1 | DPP3 | |
| PLA2G6 | RPS6KC1 | ELMOD3 | |
| SPDL1 | TMBIM4 | MPV17L | |
| TMBIM6 | TMEM116 | RPS6KC1 | |
| UQCC1 | chr7:143284899:143284974:+@chr7:143285348 | TCTN1 | |
| WBP1 | TMEM116 | ||
| RI (# of events) | (4109) | (4057) | (4084) |
| CENPV | BAX | BAX | |
| MRRF | CAPRIN2 | FANCI | |
| RP11-5A19.5 | CDK5RAP3 | HSD17B4 | |
| RPRD2 | CENPV | MTA1 | |
| SMTN | GPS2 | TAB3 | |
| IMPDH2 | |||
| QARS | |||
| SERAC1 | |||
| SE (# of events) | (25,942) | (25,835) | (25,969) |
| C2CD5 | AC013394.2 | AC013394.2 | |
| CDC42BPA | AGPAT2 | AC124789.1 | |
| DCTD | ATG7 | ARID1B | |
| DSC3 | B3GALNT2 | ATG10 | |
| GRB10 | BCL2L12 | ATG7 | |
| HMGN1 | CENPU | B3GALNT2 | |
| KCTD17 | CMTR2 | BBS1 | |
| LINC00570 | GABPB2 | BCL2L12 | |
| MIPOL1 | HMGN1 | BTBD7 | |
| MRPL52 | IMMP1L | CD320 | |
| NCSTN | KDM6A | CD59 | |
| NUMB | KLHL5 | DCTD | |
| PDE4DIP | MAPK9 | LINC00472 | |
| PXK | MRPL52 | MAPK9 | |
| RAB40B | PTK2 | MIR4435-1HG | |
| SCMH1 | SETD8 | PTK2 | |
| SPATA20 | SMURF2P1 | RHBDD1 | |
| TMEM139 | SP3 | RP4-717I23.3 | |
| TTC23 | TBL1XR1 | RPS6KB2 | |
| ZNF138 | TINF2 | SP3 | |
| ZSCAN21 | TMEM139 | ST20-MTHFS | |
| TMEM189 | TBL1XR1 | ||
| TOPORS | TOPORS | ||
| TRIP6 | UBE2I | ||
| UBE2I | YDJC | ||
| VWA9 | ZNF639 | ||
| ZNF584 | ZNF678 | ||
| chr7:143284899:143284974 |