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. 2018 Sep 10;19:317. doi: 10.1186/s12859-018-2318-8

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© The Author(s) 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Simulation study 1, scenario 1 with n_X=30, n_Y=10 and 100 runs. Evaluation of the first step of the ORdensity method using different values of α. Top: in x axis number of DE genes; in y axis estimated probability, ${\hat{p}}_{m}$ , of no considering as potential DE gene at least one gene that it really is. Bottom: in x axis number of DE genes; in y axis mean proportion of DE genes that the procedure considered as potential DE genes