Table 8.

AUC mean values for Simulation study 2, with n_X=n_Y=30 and 100 runs

nX=nY=30
	1 block			2 blocks
Nb. DE genes	5	20	100	5	20	50
ORdensity	0.995	0.995	0.980	0.993	0.998	0.985
	(0.000)	(0.000)	(0.000)	(0.000)	(0.000)	(0.000)
limma	0.701	0.854	0.903	0.796	0.789	0.917
	(0.0004)	(0.001)	(0.001)	(0.000)	(0.001)	(0.045)
SAM	0.701	0.854	0.902	0.796	0.789	0.918
	(0.001)	(0.001)	(0.00002)	(0.000)	(0.0003)	(0.045)
	3 block
Nb. DE genes	5	20	50
ORdensity	0.983	0.997	0.990
	(0.002)	(0.000)	(0.000)
limma	0.982	0.997	0.990
	(0.001)	(0.003)	(0.069)
SAM	0.825	0.994	0.876
	(0.000)	(0.003)	(0.070)