Table 1.
Bacterial species | Primer sequence (5 → 3) | Regression curve/Tm | Reference |
---|---|---|---|
Total bacteria | F: CGGYCCAGACTCCTACGGG | y = 14.354–0.2607X | [20] |
R: TTACCGCGGCTGCTGGCAC | R2 = 0.997 Tm = 59.5 °C | ||
Firmicutes | F: GGAGYATGTGGTTTAATTCGAAGCA | y = 13.073–0.2985X | [21] |
R: AGCTGACGACAACCATGCAC | R2 = 0.998 Tm = 60.5 °C | ||
Bacteroidetes | F: GGARCATGTGGTTTAATTCGATGAT | y = 14.390–0.2807X | [21] |
R: AGCTGACGACAACCATGCAG | R2 = 0.998 Tm = 58 °C | ||
Bifidobacterium | F: TCGCGTCYGGTGTGAAAG | y = 13.837–0.2045X | [21] |
R: CCACATCCAGCRTCCAC | R2 = 0.998 Tm = 61.5 °C | ||
Enterococcus spp. | F: CCCTTATTGTTAGTTGCCATCATT | y = 14.356–0.2542X | [21] |
R: ACTCGTTGTACTTCCCATTGT | R2 = 0.998 Tm = 52 °C | ||
Lactobacillus spp. | F: AGCAGTAGGGAATCTTCCA | y = 14.899–0.2863X | [22] |
R: CACCGCTACACATGGAG | R2 = 0.999 Tm = 58 °C | ||
A. hydrophila | F: GAAAGGTTGATGCCTAATACGTA | y = 13.903–0.2050× | |
R: CGTGCTGGCAACAAAGGACAG | R2 = 0.991 Tm = 53.5 °C | ||
Enterobacteriaceae | F: CATTGACGTTACCCGCAGAAGAAGC | y = 13.870–0.1927X | [23] |
R: CTCTACGAGACTCAAGCTTGC | R2 = 0.995 Tm = 53 °C | ||
Streptococcus spp. | F: AGAGTTTGATCCTGGCTCAG | y = 14.086–0.2630X | [24] |
R: GTTAGCCGTCCCTTTCTGG | R2 = 0.996 Tm = 59.5 °C |
Note: “X” is representative the value of “Ct” of PCR, “C” representative the “Cycle”, “t” representative the “threshold”. And “y” is representative the Log10 DNA gene copies quantification data