Table 6.
List of targeted genes expressed in axolotl cartilage and other joint tissues with their contig length, accession numbers and alignment quality scores.
| Gene name | cDNA length | Accession | ORF | Length (nt | aa) | Blastp (Species) | Blastp (Bit score) | Blastn (Species) | Blastn (Bit score) |
|---|---|---|---|---|---|---|---|---|
| ACAN | 1557 | MF375375 | ORF9 | 675 | 224 | Gallus gallus | 395 | Nanorana parkeri | 455 |
| BOC | 4593 | MF375376 | ORF4 | 3369 | 1122 | Mus musculus | 1368 | Coturnix japonica | 1319 |
| CD44 | 3852 | MF375377 | ORF1 | 2001 | 666 | Mus musculus | 204 | Ambystoma mexicanum | 2190 |
| Chordin | 2598 | MF375378 | ORF1 | 2148 | 715 | Xenopus laevis | 1121 | Cynops pyrrhogaster | 2152 |
| COL1A1 | 5235 | MF375379 | ORF6 | 1488 | 495 | Cynops pyrrhogaster | 869 | Cynops pyrrhogaster | 5963 |
| COL2A1 | 1342 | MF375380 | ORF6 | 840 | 279 | Xenopus laevis | 1127 | Cynops pyrrhogaster | 1531 |
| COL9A2 | 1081 | MF375381 | ORF1 | 984 | 327 | Mus musculus | 534 | Fopius arisanus | 52.8 |
| ENPP2 | 3328 | MF375382 | ORF17 | 963 | 320 | Homo sapiens | 568 | Alligator mississippiensis | 1040 |
| ERG | 820 | MF375383 | ORF4 | 651 | 216 | Gallus gallus | 364 | Struthio camelus australis | 628 |
| GDF5 | 2217 | MF375384 | ORF16 | 984 | 327 | Mus musculus | 355 | Parus major | 477 |
| IHH | 918 | MF375385 | ORF2 | 714 | 237 | Xenopus laevis | 387 | Coturnix japonica | 619 |
| MMP13 | 2116 | MF375386 | ORF2 | 1452 | 483 | Xenopus laevis | 723 | Ictalurus punctatus | 67.6 |
| NOG | 1603 | MF375387 | ORF7 | 684 | 227 | Gallus gallus | 352 | Crocodylus porosus | 606 |
| TGFBR2 | 1095 | MF375388 | ORF2 | 486 | 161 | Homo sapiens | 302 | Jaculus jaculus | 540 |
| TNC | 7031 | MF375389 | ORF20 | 5376 | 1791 | Gallus gallus | 2756 | Pterocles gutturalis | 1908 |
| WNT4 | 1976 | MF375390 | ORF20 | 1056 | 351 | Xenopus laevis | 699 | Nanorana parkeri | 878 |
| WNT9A | 2419 | MF375391 | ORF1 | 1083 | 360 | Mus musculus | 629 | Ambystoma mexicanum | 3014 |