Table 3. Variant density for individual genes from subsystems with high variance score (excluding unknown genes and categories).
| variants /bp | SEED Annotation | |
|---|---|---|
| Product | Subsystem(s) | |
| 4.7 | Nitrogen regulatory protein P-II | Ammonia assimilation |
| 4.0 | Transaldolase (EC 2.2.1.2) | Pentose phosphate pathway |
| 3.9 | Endonuclease V (EC 3.1.21.7) | DNA repair, bacterial |
| 3.7 | Probable Co/Zn/Cd efflux system membrane fusion protein | Cobalt-zinc-cadmium resistance |
| 3.7 | Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase / Geranylgeranyl pyrophosphate synthetase | Carotenoids Isoprenoid Biosynthesis Polyprenyl Diphosphate Biosynthesis |
| 3.6 | Glycosyltransferase | CBSS-258594.1.peg.3339 |
| 3.4 | Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE | Bacterial Chemotaxis Maltose and Maltodextrin Utilization |
| 3.4 | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | Bacterial RNA-metabolizing Zn-dependent hydrolases Conserved gene cluster associated with Met-tRNA formyltransferase |
| 3.1 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) | Fatty Acid Biosynthesis FASII |
| 3.0 | Transketolase (EC 2.2.1.1) | Calvin-Benson cycle Pentose phosphate pathway |
| 3.0 | Glutamate racemase (EC 5.1.1.3) | Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis |
| 2.8 | cAMP-binding proteins—catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | CBSS-258594.1.peg.3339 |
| 2.8 | Glycosyltransferase | CBSS-258594.1.peg.3339 |
| 2.8 | Glycosyl transferase, group 1 | CBSS-258594.1.peg.3339 |
| 2.7 | Phosphate transport system permease protein PstA | High affinity phosphate transporter and control of PHO regulon |
| 2.7 | cAMP-binding proteins—catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | CBSS-258594.1.peg.3339 |
| 2.6 | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS | High affinity phosphate transporter and control of PHO regulon |
| 2.5 | Gamma-glutamyltranspeptidase (EC 2.3.2.2) | Glutathione: Biosynthesis and gamma-glutamyl cycle |
| 2.4 | N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) | Sialic Acid Metabolism |
| 2.4 | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | Rhamnose containing glycans |
| 2.4 | Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase / Geranylgeranyl pyrophosphate synthetase | Carotenoids Isoprenoid Biosynthesis Polyprenyl Diphosphate Biosynthesis |
| 2.3 | Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) | Rhamnose containing glycans |
| 2.3 | Phosphoglucosamine mutase (EC 5.4.2.10) | Sialic Acid Metabolism |
| 2.2 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) | Fatty Acid Biosynthesis FASII |
| 2.2 | Maltodextrin glucosidase (EC 3.2.1.20) | Maltose and Maltodextrin Utilization |
| 2.2 | Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) | Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis |
| 2.2 | Phosphate transport system permease protein PstC (TC 3.A.1.7.1) | High affinity phosphate transporter and control of PHO regulon |
| 2.2 | Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) | DNA repair, bacterial |
| 2.2 | Cryptochrome | DNA repair, bacterial photolyase |
| 2.2 | Gamma-glutamyltranspeptidase (EC 2.3.2.2) | Glutathione: Biosynthesis and gamma-glutamyl cycle |
| 2.2 | Chemotaxis protein CheC—inhibitor of MCP methylation | Bacterial Chemotaxis |
| 2.1 | 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) | Fatty Acid Biosynthesis FASII |
| 2.0 | O-antigen export system, permease protein | Rhamnose containing glycans |
| 2.0 | Putative sucrose phosphorylase (EC 2.4.1.7) | Maltose and Maltodextrin Utilization |
| 2.0 | DNA-cytosine methyltransferase (EC 2.1.1.37) | DNA repair, bacterial |
| 2.0 | 4'-phosphopantetheinyl transferase (EC 2.7.8.-) | Fatty Acid Biosynthesis FASII |