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. 2018 Sep 18;11(9):1451–1457. doi: 10.18240/ijo.2018.09.04

Table 1. Primers used for genetic analysis and band sizes obtained.

Polymorphism Primers Method of genotyping Band sizes
VEGF -460T/C P1F-5′-TGT GCA GAC GGC AGT CAC TA-3′ Direct sequencing Not required for genotyping
P1R-5′-CCC GCT ACC AGC CGA CTT T-3′
VEGF -634G/C P2F-5′-TTG CTT GCC ATT CCC CAC TTG A-3′ PCR-RFLP with BsmFI G allele-196 and 274 bp
P2R-5′-CCG AAG CGA GAA CAG CCC AGA A-3′ C allele-470 bp
VEGF +405G/C P3F-5′-ATT TAT TTT TGC TTG CCA TT-3′ PCR-RFLP with BsmFI G allele-193 and 111 bp
P3R-5′-GTC TGT CTG TCT GTC CGT CA-3′ C allele-304 bp
VEGF +936C/T P4F-5′-AAG GAA GAG GAG ACT CTG CGC-3′ PCR-RFLP with NlaIII C allele-198 bp
P4R-5′-TAT GTG GGT GGG TGT GTC TAC AGG-3′ T allele-114 and 84 bp
ACE ID P5F-5′-CTG GAG ACC ACT CCC ATC CTT TCT-3′ PCR and confirmed with a second ARMS-PCR I allele-490 bp
P5R-5′-GAT GTG GCC ATC ACA TTC GTC AGA T-3′ D allele-190 bp
P6F-5′-TGG GAC CAC AGC GCC CGC CCG CCA CTA C-3′ I allele-335 bp
P6R-5′-TCG CCA GCC CTC CCA TGC CCA TAA-3′ D allele-no band
TNF -308G/A P7F-5′-AGG CAA TAG GTT TTG AGG GCC AT-3′ PCR-RFLP with NcoI G allele-87 and 20 bp
P7R-5′-TCC TCC CTG CTC CGA TTC CG-3′ A allele-107 bp
GSTT1 null/present P8F-5′-TTC CTT ACT GGT CCT CAC ATC TC-3′ PCR (multiplex with albumin gene) Null-no band
P8R-5′-TCA CCG GAT CAT GGC CAG CA-3′ Present-459 bp
P9F-5′-GCC CTC TGC TAA CAA GTC CTA C-3′ Internal control-350 bp
P9R-5′-GCC CTA AAA AGA AAA TCC CCA ATC-3′
GSTM1 null/present P10F-5′-GAA CTC CCT GAA AAG CTA AAG C-3′ PCR (multiplex with albumin gene) Null-no band
P10R-5′-GTT GGG CTC AAA TAT ACG GTG G-3′ Present-219 bp
P9F-5′-GCC CTC TGC TAA CAA GTC CTA C-3′ Internal control-350 bp
P9R-5′-GCC CTA AAA AGA AAA TCC CCA ATC-3′
GSTP1 Ile/Val P11F-5′-ACC CCA GGG CTC TAT GGG AA-3′ PCR-RFLP with Alw26I Ile allele-176 bp
P11R-5′-TGA GGG CAC AAG AAG CCC CT-3′ Val allele-85 and 91 bp