. 2018 Sep 5;9:1311. doi: 10.3389/fpls.2018.01311

Table 3.

Significantly associated QTNs identified by four GWAS methods for seven pasting properties of maize starch.

Trait	Marker	Alleles	Chr	Pos	FASTmrEMMA		FarmCPU		LASSO		GEMMA
					Effect	R² (%)	Effect	R² (%)	Effect	R² (%)	Effect	R² (%)
PV	SNP_2_190495578^#	C/A	2	190495578	256.70	7.05
	SNP_2_42359599	A/G	2	42359599	−131.53	2.87
	SNP_2_51001688	A/C	2	51001688	−191.54	5.03
	SNP_3_171824570^#	G/T	3	171824570	126.17	2.46
	SNP_4_64845133	A/G	4	64845133	193.04	2.81
	SNP_4_89429269^#	G/A	4	89429269	134.34	3.09
	SNP_5_26160368	T/A	5	26160368							−234.93	11.13
	SNP_5_26160478	C/A	5	26160478							−234.29	11.64
	SNP_6_109456130^#	A/C	6	109456130			−116.84	7.12
	SNP_6_164038368	C/A	6	164038368					−51.80	0.46
	SNP_7_160060597^#	A/G	7	160060597	174.52	2.79
	SNP_8_147208913	C/T	8	147208913			−133.38	5.05
	SNP_9_138239683^#	C/A	9	138239683					−68.33	1.03
	SNP_9_58569771	C/T	9	58569771	210.21	3.01
TV	SNP_2_190495578^#	C/A	2	190495578	148.11	5.18
	SNP_2_75175274	A/G	2	75175274	−163.45	3.19
	SNP_4_144401228^∗	A/G	4	144401228	−141.31	4.68			−30.63	0.88
	SNP_4_89429269^#∗	G/A	4	89429269	103.79	4.07	54.80	4.56
	SNP_5_168661067	G/C	5	168661067			−76.75	4.19
	SNP_8_104430223	T/C	8	104430223	163.65	7.19
	SNP_9_138239602	G/C	9	138239602			−102.16	4.94
	SNP_9_138239683^#	C/A	9	138239683					−44.03	0.94
	SNP_10_12091187	A/G	10	12091187	−103.99	3.72
	SNP_10_142948941	A/G	10	142948941			48.76	3.85
BD	SNP_1_241610826	C/T	1	241610826			−33.08	4.33
	SNP_1_825561	C/T	1	825561	93.47	3.56
	SNP_4_146006182	G/A	4	146006182	73.78	3.74
	SNP_6_109456130^#	A/C	6	109456130			−58.28	9.86
	SNP_7_160060597^#	A/G	7	160060597	76.06	2.95
	SNP_9_142242612	C/T	9	142242612	−49.54	2.53
	SNP_10_138051694	G/C	10	138051694							82.38	10.28
	SNP_10_9143566	G/T	10	9143566	−83.04	5.87
FV	SNP_1_283390691	T/C	1	283390691			106.83	5.53
	SNP_2_51001706	C/T	2	51001706	−273.07	6.02
	SNP_5_160490300	A/G	5	160490300			−142.99	5.16
	SNP_5_160866262	T/C	5	160866262			167.30	6.97
	SNP_5_213796937	A/G	5	213796937			−96.09	3.71
	SNP_6_107223456	G/C	6	107223456							−206.80	12.03
	SNP_6_115373488	G/A	6	115373488	175.34	3.14
	SNP_7_173235732^#	T/G	7	173235732			130.23	5.04
	SNP_8_124259102	A/C	8	124259102					−64.27	0.51
	SNP_8_154309867	G/T	8	154309867			150.77	6.61
	SNP_9_113510544	G/A	9	113510544	264.83	3.48
	SNP_9_83760699	A/T	9	83760699			143.42	3.60
SB	SNP_1_168229057	C/T	1	168229057					−40.57	0.44
	SNP_2_27401698	G/T	2	27401698					−37.77	0.31
	SNP_2_46177221	G/A	2	46177221	147.63	2.52
	SNP_6_104663091	A/C	6	104663091			115.82	9.30
	SNP_6_124651063	G/A	6	124651063			−63.76	3.81
	SNP_6_158401136	G/C	6	158401136			−72.23	3.41
	SNP_7_173235732^#	T/G	7	173235732	186.23	4.73
	SNP_7_48994000	A/G	7	48994000	−166.31	5.17
	SNP_8_38060255	T/C	8	38060255	−148.06	2.91
	SNP_9_103241537^∗	G/C	9	103241537	213.43	9.35	81.24	5.44
	SNP_9_109684667^∗	C/A	9	109684667					41.66	0.54	181.03	10.19
	SNP_10_143879663	G/A	10	143879663	163.20	4.53
PT	SNP_2_79885513	T/C	2	79885513							0.31	10.34
	SNP_2_9506602^∗	T/C	2	9506602			−0.18	5.14	−0.06	0.53	−0.24	9.74
	SNP_3_219463585	T/A	3	219463585			−0.10	4.67
	SNP_4_211011498	T/C	4	211011498					−0.07	0.54
	SNP_5_59630329	G/C	5	59630329					−0.07	0.58
	SNP_8_22655499	T/A	8	22655499	0.34	5.00
PTP	SNP_2_80464203	C/T	2	80464203	1.36	2.24
	SNP_3_12888452^∗	G/C	3	12888452			1.58	14.96	0.27	0.42
	SNP_3_171824570^#	G/T	3	171824570	−1.26	6.02
	SNP_4_193530385	T/G	4	193530385	−1.36	3.71
	SNP_4_71048778	A/G	4	71048778	−1.27	3.32

^#Indicates the QTN identified across different traits. ^∗Indicates the QTN identified across different methods.