Table 4.

Statistical powers (%) of eight simulated QTL and Type I error rates for four GWAS methods drawn from 200 replicated simulation experiments.

QTL	FASTmrEMMA	FarmCPU	LASSO	GEMMA
QTL1	52.5	22.5	5.5	6
QTL2	20.5	15.5	39	0
QTL3	55	46	62	41
QTL4	47	11.5	9	2.5
QTL5	92	61	83.5	60
QTL6	58	57	51	50
QTL7	20.5	65	92.5	94
QTL8	96	68	87	70
Type I error	6.99E-05	7.17E-05	4.70E-05	6.58E-05