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. Author manuscript; available in PMC: 2018 Sep 12.
Published in final edited form as: J Stat Softw. 2017 Jul 17;79(4):1–26. doi: 10.18637/jss.v079.i04

Table 1:

List of abbreviations.

Variable Name
1compartment One compartment model (O’Flaherty 1981), shown in Figure 1.
3compartment Three compartment model (Jamei et al. 2009), shown in Figure 1.
3compartmentss Three compartment steady state model (Wetmore et al. 2012; Wetmore 2015).
BW Body weight.
Css Average plasma concentration of a chemical at steady state.
Clint In vitro intrinsic hepatic clearance.
Clmetabolism Whole liver hepatic clearance, scaled from Clint.
Clwell–stirred Hepatic clearance modeled with well-stirred approximation using Clmetabolism.
fub Fraction unbound, in vitro ratio of unbound to total concentration in plasma.
httk High-throughput toxicokinetics.
kelim Elimination rate.
kgutabs Gut absorption rate, default of 1 h−1.
logP Logarithm (base 10) of octanol to water partition coefficient.
pbtk Physiologically based toxicokinetic model, shown in Figure 1.
Qcardiac Cardiac output, blood flow through the heart and lungs.
Qgfr Glomerular filtration rate.
Qrest The difference between Qcardiac and the flow to the liver, kidney, and gut.
Qtissue Blood flow to a tissue.
QSAR Quantitative structure-activity relationship.
Rblood2plasma Ratio of the blood concentration of a chemical to the plasma concentration.
SBML Systems biology markup language.
SMILES Simplified molecular-input line-entry system.
Vdist Volume of distribution, the weighted sum of all partition coefficients.
HHS Vulnerability Disclosure