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. 2018 Sep 12;8:13652. doi: 10.1038/s41598-018-31961-x

Table 1.

Superposition of JoJ48C11 Fab on other Fab Cα-positions.

CL CH VL VH
PDB IDs Za rmsdb %idc PDBIDs Za rmsdb %idc PDB IDs Za rmsdb %idc PDB IDs Za rmsdb %idc
5ILD 21.1 0.4 99 5ITB 21.1 0.5 99 4I9W 23.4 0.4 96 1OAQ 23.3 1.2 84
5VH3 21.1 0.4 99 4HH9 21.1 0.5 100 4ZSO 23.2 0.4 90 1OAU 23.2 1.1 84
4XMP 21.1 0.4 99 5U3M 21.1 0.5 99 1QOK 23.1 0.6 89 1OAR 23.1 1.2 84
4J6R 21.0 0.5 99 5IES 21.1 0.3 100 5D93 23.1 0.5 87 5D93 23.1 1.0 77
5TE7 21.0 0.5 99 5MVZ 21.1 0.5 99 2ZKH 23.1 0.5 83 2E27 23.1 0.8 78
5MVZ 21.0 0.5 99 4PUB 21.1 0.4 99 2W9D 23.1 0.6 93 5T5N 23.1 1.1 79
3QOS 21.0 0.4 99 1L7I 21.0 0.5 100 2Z91 23.0 0.5 92 3HNS 23.0 1.2 70
5DRX 21.0 0.4 99 5U3O 21.0 0.6 99 5D93 23.0 0.5 87 1SY6 23.0 1.0 89
5D6C 21.0 0.3 99 5U3N 21.0 0.5 99 4F33 23.0 0.6 90 3HNT 23.0 1.2 70
5IES 20.9 0.3 100 4IFY 20.9 0.7 100 4EBQ 23.0 0.6 83 1OAX 22.9 1.2 84

The percent identities, rmsd values, and Z-scores have been calculated with DALI62 using the JoJ48C11 Fab as a reference (PDB entry 6EV1).

aZ: Z-scores, DALI gives higher Z-scores for highly similar structures.

brmsd: Root mean square deviation for superposition of Cα atoms.

c%id: Percent identities.