Table 1.
Superposition of JoJ48C11 Fab on other Fab Cα-positions.
| CL | CH | VL | VH | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB IDs | Za | rmsdb | %idc | PDBIDs | Za | rmsdb | %idc | PDB IDs | Za | rmsdb | %idc | PDB IDs | Za | rmsdb | %idc |
| 5ILD | 21.1 | 0.4 | 99 | 5ITB | 21.1 | 0.5 | 99 | 4I9W | 23.4 | 0.4 | 96 | 1OAQ | 23.3 | 1.2 | 84 |
| 5VH3 | 21.1 | 0.4 | 99 | 4HH9 | 21.1 | 0.5 | 100 | 4ZSO | 23.2 | 0.4 | 90 | 1OAU | 23.2 | 1.1 | 84 |
| 4XMP | 21.1 | 0.4 | 99 | 5U3M | 21.1 | 0.5 | 99 | 1QOK | 23.1 | 0.6 | 89 | 1OAR | 23.1 | 1.2 | 84 |
| 4J6R | 21.0 | 0.5 | 99 | 5IES | 21.1 | 0.3 | 100 | 5D93 | 23.1 | 0.5 | 87 | 5D93 | 23.1 | 1.0 | 77 |
| 5TE7 | 21.0 | 0.5 | 99 | 5MVZ | 21.1 | 0.5 | 99 | 2ZKH | 23.1 | 0.5 | 83 | 2E27 | 23.1 | 0.8 | 78 |
| 5MVZ | 21.0 | 0.5 | 99 | 4PUB | 21.1 | 0.4 | 99 | 2W9D | 23.1 | 0.6 | 93 | 5T5N | 23.1 | 1.1 | 79 |
| 3QOS | 21.0 | 0.4 | 99 | 1L7I | 21.0 | 0.5 | 100 | 2Z91 | 23.0 | 0.5 | 92 | 3HNS | 23.0 | 1.2 | 70 |
| 5DRX | 21.0 | 0.4 | 99 | 5U3O | 21.0 | 0.6 | 99 | 5D93 | 23.0 | 0.5 | 87 | 1SY6 | 23.0 | 1.0 | 89 |
| 5D6C | 21.0 | 0.3 | 99 | 5U3N | 21.0 | 0.5 | 99 | 4F33 | 23.0 | 0.6 | 90 | 3HNT | 23.0 | 1.2 | 70 |
| 5IES | 20.9 | 0.3 | 100 | 4IFY | 20.9 | 0.7 | 100 | 4EBQ | 23.0 | 0.6 | 83 | 1OAX | 22.9 | 1.2 | 84 |
The percent identities, rmsd values, and Z-scores have been calculated with DALI62 using the JoJ48C11 Fab as a reference (PDB entry 6EV1).
aZ: Z-scores, DALI gives higher Z-scores for highly similar structures.
brmsd: Root mean square deviation for superposition of Cα atoms.
c%id: Percent identities.