Table 1.
Full list of ChIP-Seq TSS-Promoter genes.
| Gene Name | Gene Description | Nearest Refseq | Gene Type |
|---|---|---|---|
| Abcc10 | ATP-binding cassette, subfamily C (CFTR/MRP), member 10 | NM_001108201 | protein-coding |
| Acot13 | acyl-CoA thioesterase 13 | NM_001106111 | protein-coding |
| Acp1 | acid phosphatase 1, soluble | NM_021262 | protein-coding |
| Acpt | acid phosphatase, testicular | NM_001107510 | protein-coding |
| Actc1 | actin, alpha, cardiac muscle 1 | NM_019183 | protein-coding |
| Adra2b | adrenoceptor alpha 2B | NM_138505 | protein-coding |
| Agrn | agrin | NM_175754 | protein-coding |
| Ahrr | aryl-hydrocarbon receptor repressor | NM_001024285 | protein-coding |
| Aldh3a2 | aldehyde dehydrogenase 3 family, member A2 | NM_031731 | protein-coding |
| Alg11 | ALG11, alpha-1,2-mannosyltransferase | NM_001108401 | protein-coding |
| Alg8 | ALG8, alpha-1,3-glucosyltransferase | NM_001034127 | protein-coding |
| Amdhd1 | amidohydrolase domain containing 1 | NM_001191781 | protein-coding |
| Anxa2 | annexin A2 | NM_019905 | protein-coding |
| Arfgap2 | ADP-ribosylation factor GTPase activating protein 2 | NM_001033707 | protein-coding |
| Arhgap4 | Rho GTPase activating protein 4 | NM_144740 | protein-coding |
| Asl | argininosuccinate lyase | NM_021577 | protein-coding |
| Atp6v0e1 | ATPase, H+ transporting, lysosomal, V0 subunit e1 | NM_053578 | protein-coding |
| Atraid | all-trans retinoic acid-induced differentiation factor | NM_001127526 | protein-coding |
| B3galt4 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 | NM_133553 | protein-coding |
| Bbs2 | Bardet-Biedl syndrome 2 | NM_053618 | protein-coding |
| Bbs5 | Bardet-Biedl syndrome 5 | NM_001108583 | protein-coding |
| Bin2 | bridging integrator 2 | NM_001012223 | protein-coding |
| Bphl | biphenyl hydrolase-like (serine hydrolase) | NM_001037206 | protein-coding |
| Brd9 | bromodomain containing 9 | NM_001107453 | protein-coding |
| Cacng8 | calcium channel, voltage-dependent, gamma subunit 8 | NM_080696 | protein-coding |
| Cap1 | CAP, adenylate cyclase-associated protein 1 (yeast) | NM_022383 | protein-coding |
| Casp6 | caspase 6 | NM_031775 | protein-coding |
| Cblc | Cbl proto-oncogene C, E3 ubiquitin protein ligase | NM_001034920 | protein-coding |
| Cct6a | chaperonin containing Tcp1, subunit 6 A (zeta 1) | NM_001033684 | protein-coding |
| Cdc20 | cell division cycle 20 | NM_171993 | protein-coding |
| Cers1 | ceramide synthase 1 | NM_001044230 | protein-coding |
| Chad | chondroadherin | NM_019164 | protein-coding |
| Chmp1a | charged multivesicular body protein 1 A | NM_001083313 | protein-coding |
| Chrnb1 | cholinergic receptor, nicotinic, beta 1 (muscle) | NM_012528 | protein-coding |
| Ciapin1 | cytokine induced apoptosis inhibitor 1 | NM_001007689 | protein-coding |
| Cidea | cell death-inducing DFFA-like effector a | NM_001170467 | protein-coding |
| Clpsl2 | colipase-like 2 | NM_001135002 | protein-coding |
| Cnksr1 | connector enhancer of kinase suppressor of Ras 1 | NM_001039011 | protein-coding |
| Col4a3 | collagen, type IV, alpha 3 | NM_001135759 | protein-coding |
| Col7a1 | collagen, type VII, alpha 1 | NM_001106858 | protein-coding |
| Cpne6 | copine VI (neuronal) | NM_001191113 | protein-coding |
| Cpsf3l | cleavage and polyadenylation specific factor 3-like | NM_001033892 | protein-coding |
| Cpsf4 | cleavage and polyadenylation specific factor 4 | NM_001012351 | protein-coding |
| Crcp | CGRP receptor component | NM_053670 | protein-coding |
| Cth | cystathionine gamma-lyase | NM_017074 | protein-coding |
| Ctr9 | CTR9 homolog, Paf1/RNA polymerase II complex component | NM_001100661 | protein-coding |
| Cyb5r1 | cytochrome b5 reductase 1 | NM_001013126 | protein-coding |
| Cyba | cytochrome b-245, alpha polypeptide | NM_024160 | protein-coding |
| Ddb1 | damage-specific DNA binding protein 1, 127 kDa | NM_171995 | protein-coding |
| Ddb2 | damage specific DNA binding protein 2 | NM_001271346 | protein-coding |
| Ddias | DNA damage-induced apoptosis suppressor | NM_001126294 | protein-coding |
| Ddit4l2 | DNA-damage-inducible transcript 4-like 2 | NM_080399 | protein-coding |
| Ddx55 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 | NM_001271326 | protein-coding |
| Ddx56 | DEAD (Asp-Glu-Ala-Asp) box helicase 56 | NM_001004211 | protein-coding |
| Dhdds | dehydrodolichyl diphosphate synthase subunit | NM_001011978 | protein-coding |
| Dmrtc2 | DMRT-like family C2 | NM_001109140 | protein-coding |
| Dnaja1 | DnaJ (Hsp40) homolog, subfamily A, member 1 | NM_022934 | protein-coding |
| Eif3e | eukaryotic translation initiation factor 3, subunit E | NM_001011990 | protein-coding |
| Emc3 | ER membrane protein complex subunit 3 | NM_001008355 | protein-coding |
| Emd | emerin | NM_012948 | protein-coding |
| Entpd6 | ectonucleoside triphosphate diphosphohydrolase 6 | NM_053498 | protein-coding |
| Eny2 | enhancer of yellow 2 homolog (Drosophila) | NM_001130580 | protein-coding |
| Ephx2 | epoxide hydrolase 2, cytoplasmic | NM_022936 | protein-coding |
| Fam151a | family with sequence similarity 151, member A | NM_001005558 | protein-coding |
| Fam178b | family with sequence similarity 178, member B | NM_001122653 | protein-coding |
| Fam192a | family with sequence similarity 192, member A | NM_001014014 | protein-coding |
| Fanca | Fanconi anemia, complementation group A | NM_001108455 | protein-coding |
| Fbxo44 | F-box protein 44 | NM_001191576 | protein-coding |
| Fdxr | ferredoxin reductase | NM_024153 | protein-coding |
| Fgfr1op2 | FGFR1 oncogene partner 2 | NM_201421 | protein-coding |
| Fkbp6 | FK506 binding protein 6 | NM_001105922 | protein-coding |
| Foxm1 | forkhead box M1 | NM_031633 | protein-coding |
| Fyco1 | FYVE and coiled-coil domain containing 1 | NM_001106870 | protein-coding |
| Gamt | guanidinoacetate N-methyltransferase | NM_012793 | protein-coding |
| Gdf1 | growth differentiation factor 1 | NM_001044240 | protein-coding |
| Gja4 | gap junction protein, alpha 4 | NM_021654 | protein-coding |
| Gjd4 | gap junction protein, delta 4 | NM_001100487 | protein-coding |
| Gna15 | guanine nucleotide binding protein, alpha 15 | NM_053542 | protein-coding |
| Gng5 | guanine nucleotide binding protein (G protein), gamma 5 | NM_024377 | protein-coding |
| Gnmt | glycine N-methyltransferase | NM_017084 | protein-coding |
| Gnpat | glyceronephosphate O-acyltransferase | NM_053410 | protein-coding |
| Gosr2 | golgi SNAP receptor complex member 2 | NM_031685 | protein-coding |
| Gpalpp1 | GPALPP motifs containing 1 | NM_001024875 | protein-coding |
| Gtf2e1 | general transcription factor IIE, polypeptide 1, alpha | NM_001100556 | protein-coding |
| Gtsf1 | gametocyte specific factor 1 | NM_001079707 | protein-coding |
| Gzf1 | GDNF-inducible zinc finger protein 1 | NM_001107788 | protein-coding |
| Hcfc1r1 | host cell factor C1 regulator 1 (XPO1-dependent) | NM_001100492 | protein-coding |
| Higd2a | HIG1 hypoxia inducible domain family, member 2 A | NM_001106102 | protein-coding |
| Hist3h2a | histone cluster 3, H2a | NM_021840 | protein-coding |
| Hist3h2bb | histone cluster 3, H2bb | NM_001109641 | protein-coding |
| Hoxc8 | homeobox C8 | NM_001177326 | protein-coding |
| Hoxd10 | homeo box D10 | NM_001107094 | protein-coding |
| Hrg | histidine-rich glycoprotein | NM_133428 | protein-coding |
| Icam1 | intercellular adhesion molecule 1 | NM_012967 | protein-coding |
| Idua | iduronidase, alpha-L- | NM_001172084 | protein-coding |
| Ift122 | intraflagellar transport 122 | NM_001009416 | protein-coding |
| Ikzf5 | IKAROS family zinc finger 5 | NM_001107555 | protein-coding |
| Il17rb | interleukin 17 receptor B | NM_001107290 | protein-coding |
| Itga4 | integrin, alpha 4 | NM_001107737 | protein-coding |
| Jagn1 | jagunal homolog 1 | NM_001044272 | protein-coding |
| Jtb | jumping translocation breakpoint | NM_019213 | protein-coding |
| Kb15 | type II keratin Kb15 | NM_001008825 | protein-coding |
| Kcne5 | potassium channel, voltage-gated Isk-related subfamily E regulatory beta subunit 5 | NM_001101003 | protein-coding |
| Kdelr1 | KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 | NM_001017385 | protein-coding |
| Kiaa0895l | hypothetical protein LOC688736 | NM_001044292 | protein-coding |
| Kif11 | kinesin family member 11 | NM_001169112 | protein-coding |
| Kif18b | kinesin family member 18B | NM_001039019 | protein-coding |
| Klrd1 | killer cell lectin-like receptor, subfamily D, member 1 | NM_012745 | protein-coding |
| Krt33b | keratin 33B | NM_001008819 | protein-coding |
| Lars2 | leucyl-tRNA synthetase 2, mitochondrial | NM_001108787 | protein-coding |
| Leng1 | leukocyte receptor cluster (LRC) member 1 | NM_001106218 | protein-coding |
| Lhx1 | LIM homeobox 1 | NM_145880 | protein-coding |
| LOC100912214 | uncharacterized LOC100912214 | NR_131101 | ncRNA |
| LOC103689982 | lysophospholipid acyltransferase 7 | NM_001313940 | protein-coding |
| LOC288913 | similar to LEYDIG CELL TUMOR 10 KD PROTEIN | NM_198728 | protein-coding |
| LOC498154 | hypothetical protein LOC498154 | NM_001025033 | protein-coding |
| LOC688925 | similar to Glutathione S-transferase alpha-4 | NM_001270386 | protein-coding |
| Lrrc14 | leucine rich repeat containing 14 | NM_001024354 | protein-coding |
| Lrrc27 | leucine rich repeat containing 27 | NM_001113789 | protein-coding |
| Lrrc36 | leucine rich repeat containing 36 | NM_001004088 | protein-coding |
| Lrrc51 | leucine rich repeat containing 51 | NM_001106284 | protein-coding |
| Lypd3 | Ly6/Plaur domain containing 3 | NM_021759 | protein-coding |
| Lzic | leucine zipper and CTNNBIP1 domain containing | NM_001013241 | protein-coding |
| Lztfl1 | leucine zipper transcription factor-like 1 | NM_001024266 | protein-coding |
| Maf1 | MAF1 homolog, negative regulator of RNA polymerase III | NM_001014085 | protein-coding |
| Mag | myelin-associated glycoprotein | NM_017190 | protein-coding |
| Mal | mal, T-cell differentiation protein | NM_012798 | protein-coding |
| Mboat7 | membrane bound O-acyltransferase domain containing 7 | NM_001134978 | protein-coding |
| Mcemp1 | mast cell-expressed membrane protein 1 | NM_001134602 | protein-coding |
| Mea1 | male-enhanced antigen 1 | NM_001044286 | protein-coding |
| Med11 | mediator complex subunit 11 | NM_001105799 | protein-coding |
| Mir137 | microRNA 137 | NR_031883 | ncRNA |
| Mir207 | microRNA 207 | NR_032107 | ncRNA |
| Mir338 | microRNA 338 | NR_031783 | ncRNA |
| Mir3562 | microRNA 3562 | NR_037344 | ncRNA |
| Misp | mitotic spindle positioning | NM_001109284 | protein-coding |
| Mrpl43 | mitochondrial ribosomal protein L43 | NM_001107598 | protein-coding |
| Mrps18b | mitochondrial ribosomal protein S18B | NM_212534 | protein-coding |
| Mrps25 | mitochondrial ribosomal protein S25 | NM_001025408 | protein-coding |
| Mt2A | metallothionein 2A | NM_001137564 | protein-coding |
| Mt3 | metallothionein 3 | NM_053968 | protein-coding |
| Mterf3 | mitochondrial transcription termination factor 3 | NM_199387 | protein-coding |
| Mtf1 | metal-regulatory transcription factor 1 | NM_001108677 | protein-coding |
| Mtf2 | metal response element binding transcription factor 2 | NM_001100898 | protein-coding |
| Myeov2 | myeloma overexpressed 2 | NM_001109044 | protein-coding |
| Naa38 | N(alpha)-acetyltransferase 38, NatC auxiliary subunit | NM_001105794 | protein-coding |
| Ncbp1 | nuclear cap binding protein subunit 1 | NM_001014785 | protein-coding |
| Ncoa4 | nuclear receptor coactivator 4 | NM_001034007 | protein-coding |
| Ndor1 | NADPH dependent diflavin oxidoreductase 1 | NM_001107818 | protein-coding |
| Ndufb8 | NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 | NM_001106360 | protein-coding |
| Ndufs5 | NADH dehydrogenase (ubiquinone) Fe-S protein 5 | NM_001030052 | protein-coding |
| Ndufv3 | NADH dehydrogenase (ubiquinone) flavoprotein 3 | NM_022607 | protein-coding |
| Nipsnap1 | nipsnap homolog 1 (C. elegans) | NM_001100730 | protein-coding |
| Nme3 | NME/NM23 nucleoside diphosphate kinase 3 | NM_053507 | protein-coding |
| Nmi | N-myc (and STAT) interactor | NM_001034148 | protein-coding |
| Nmu | neuromedin U | NM_022239 | protein-coding |
| Nob1 | NIN1/RPN12 binding protein 1 homolog | NM_199086 | protein-coding |
| Nolc1 | nucleolar and coiled-body phosphoprotein 1 | NM_022869 | protein-coding |
| Nr2c2ap | nuclear receptor 2C2-associated protein | NM_001047104 | protein-coding |
| Nsl1 | NSL1, MIS12 kinetochore complex component | NM_001109083 | protein-coding |
| Ntpcr | nucleoside-triphosphatase, cancer-related | NM_001134573 | protein-coding |
| Ntsr1 | neurotensin receptor 1 | NM_001108967 | protein-coding |
| Nubp2 | nucleotide binding protein 2 | NM_001011891 | protein-coding |
| Nudt2 | nudix (nucleoside diphosphate linked moiety X)-type motif 2 | NM_207596 | protein-coding |
| Olr437 | olfactory receptor 437 | NM_001109347 | protein-coding |
| Olr760 | olfactory receptor 760 | NM_001001069 | protein-coding |
| Ovca2 | ovarian tumor suppressor candidate 2 | NM_001109036 | protein-coding |
| Pcdha3 | protocadherin alpha 3 | NM_053941 | protein-coding |
| Pctp | phosphatidylcholine transfer protein | NM_017225 | protein-coding |
| Pex1 | peroxisomal biogenesis factor 1 | NM_001109220 | protein-coding |
| Phlda2 | pleckstrin homology-like domain, family A, member 2 | NM_001100521 | protein-coding |
| Phldb3 | pleckstrin homology-like domain, family B, member 3 | NM_001191622 | protein-coding |
| Pigp | phosphatidylinositol glycan anchor biosynthesis, class P | NM_001099758 | protein-coding |
| Plcxd2 | phosphatidylinositol-specific phospholipase C, X domain containing 2 | NM_001134481 | protein-coding |
| Plp2 | proteolipid protein 2 (colonic epithelium-enriched) | NM_207601 | protein-coding |
| Pmf1 | polyamine-modulated factor 1 | NM_001191568 | protein-coding |
| Pnldc1 | poly(A)-specific ribonuclease (PARN)-like domain containing 1 | NM_001025724 | protein-coding |
| Polr3d | polymerase (RNA) III (DNA directed) polypeptide D | NM_001031653 | protein-coding |
| Pou6f1 | POU class 6 homeobox 1 | NM_001105746 | protein-coding |
| Ppp1r11 | protein phosphatase 1, regulatory (inhibitor) subunit 11 | NM_212542 | protein-coding |
| Ppt2 | palmitoyl-protein thioesterase 2 | NM_019367 | protein-coding |
| Psmg4 | proteasome (prosome, macropain) assembly chaperone 4 | NM_001109543 | protein-coding |
| Ptcd1 | pentatricopeptide repeat domain 1 | NM_001109665 | protein-coding |
| Ptk2b | protein tyrosine kinase 2 beta | NM_017318 | protein-coding |
| Qk | quaking | NM_001115021 | protein-coding |
| Rab3gap2 | RAB3 GTPase activating protein subunit 2 | NM_001008294 | protein-coding |
| Rab5c | RAB5C, member RAS oncogene family | NM_001105840 | protein-coding |
| Rad51ap1 | RAD51 associated protein 1 | NM_001079711 | protein-coding |
| Ranbp10 | RAN binding protein 10 | NM_001135875 | protein-coding |
| Rec8 | REC8 meiotic recombination protein | NM_001011916 | protein-coding |
| Rfc2 | replication factor C (activator 1) 2 | NM_053786 | protein-coding |
| RGD1307443 | similar to mKIAA0319 protein | NM_001197023 | protein-coding |
| RGD1309188 | similar to hypothetical protein BC011833 | NM_001108129 | protein-coding |
| RGD1309676 | similar to RIKEN cDNA 5730469M10 | NM_001014140 | protein-coding |
| RGD1311703 | similar to sid2057p | NM_001013898 | protein-coding |
| RGD1359334 | similar to hypothetical protein FLJ20519 | NM_001007638 | protein-coding |
| RGD1559909 | RGD1559909 | NM_001108678 | protein-coding |
| RGD1560608 | similar to novel protein | NM_001109280 | protein-coding |
| RGD1562683 | RGD1562683 | NM_001108314 | protein-coding |
| RGD1563714 | RGD1563714 | NM_001126297 | protein-coding |
| RGD1564036 | similar to RIKEN cDNA 3010026O09 | NM_001109030 | protein-coding |
| Ribc2 | RIB43 A domain with coiled-coils 2 | NM_001013949 | protein-coding |
| Rnf40 | ring finger protein 40, E3 ubiquitin protein ligase | NM_153471 | protein-coding |
| Rph3a | rabphilin 3A | NM_133518 | protein-coding |
| Rpl27 | ribosomal protein L27 | NM_022514 | protein-coding |
| Rpl27a | ribosomal protein L27a | NM_001106290 | protein-coding |
| Rspry1 | ring finger and SPRY domain containing 1 | NM_001100945 | protein-coding |
| Rxfp3 | relaxin/insulin-like family peptide receptor 3 | NM_001008310 | protein-coding |
| Sart3 | squamous cell carcinoma antigen recognized by T-cells 3 | NM_001107156 | protein-coding |
| Scly | selenocysteine lyase | NM_001007755 | protein-coding |
| Sert1 | Sertoli cell protein 1 | NR_130708 | ncRNA |
| Sfxn3 | sideroflexin 3 | NM_022948 | protein-coding |
| Skap2 | src kinase associated phosphoprotein 2 | NM_130413 | protein-coding |
| Slc19a2 | solute carrier family 19 (thiamine transporter), member 2 | NM_001030024 | protein-coding |
| Slc25a54 | solute carrier family 25, member 54 | NM_001109640 | protein-coding |
| Slc43a3 | solute carrier family 43, member 3 | NM_001107743 | protein-coding |
| Slc5a6 | solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 | NM_130746 | protein-coding |
| Slc6a20 | solute carrier family 6 (proline IMINO transporter), member 20 | NM_133296 | protein-coding |
| Slc6a3 | solute carrier family 6 (neurotransmitter transporter), member 3 | NM_012694 | protein-coding |
| Snrnp35 | small nuclear ribonucleoprotein 35 (U11/U12) | NM_001014127 | protein-coding |
| Snrpb2 | small nuclear ribonucleoprotein polypeptide B” | NM_001108592 | protein-coding |
| Spag7 | sperm associated antigen 7 | NM_001107016 | protein-coding |
| Spata33 | spermatogenesis associated 33 | NM_001106195 | protein-coding |
| Spata5 | spermatogenesis associated 5 | NM_001108549 | protein-coding |
| Spic | Spi-C transcription factor (Spi-1/PU.1 related) | NM_001108080 | protein-coding |
| Stam | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 | NM_001109121 | protein-coding |
| Stk19 | serine/threonine kinase 19 | NM_001013197 | protein-coding |
| Susd3 | sushi domain containing 3 | NM_001107341 | protein-coding |
| Tada3 | transcriptional adaptor 3 | NM_001025734 | protein-coding |
| Taf6l | TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor | NM_001107575 | protein-coding |
| Tax1bp3 | Tax1 (human T-cell leukemia virus type I) binding protein 3 | NM_001025419 | protein-coding |
| Tbc1d25 | TBC1 domain family, member 25 | NM_001106955 | protein-coding |
| Tbcb | tubulin folding cofactor B | NM_001040180 | protein-coding |
| Them4 | thioesterase superfamily member 4 | NM_001025017 | protein-coding |
| Tmem109 | transmembrane protein 109 | NM_001007736 | protein-coding |
| Tmem126a | transmembrane protein 126 A | NM_001011557 | protein-coding |
| Tnxa-ps1 | tenascin XA, pseudogene 1 | NR_024118 | pseudo |
| Trappc1 | trafficking protein particle complex 1 | NM_001039378 | protein-coding |
| Trim23 | tripartite motif-containing 23 | NM_001100637 | protein-coding |
| Trip13 | thyroid hormone receptor interactor 13 | NM_001011930 | protein-coding |
| Trip4 | thyroid hormone receptor interactor 4 | NM_001134981 | protein-coding |
| Trmt112 | tRNA methyltransferase 11-2 homolog (S. cerevisiae) | NM_001106330 | protein-coding |
| Tsc2 | tuberous sclerosis 2 | NM_012680 | protein-coding |
| Tstd2 | thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 | NM_001108663 | protein-coding |
| Ttc3 | tetratricopeptide repeat domain 3 | NM_001108315 | protein-coding |
| Tuba3a | tubulin, alpha 3A | NM_001040008 | protein-coding |
| Tuba4a | tubulin, alpha 4A | NM_001007004 | protein-coding |
| Tubb2b | tubulin, beta 2B class IIb | NM_001013886 | protein-coding |
| Ufsp2 | UFM1-specific peptidase 2 | NM_001014142 | protein-coding |
| Vmp1 | vacuole membrane protein 1 | NM_138839 | protein-coding |
| Vwa7 | von Willebrand factor A domain containing 7 | NM_212499 | protein-coding |
| Zbtb26 | zinc finger and BTB domain containing 26 | NM_001107840 | protein-coding |
| Zfp142 | zinc finger protein 142 | NM_001108225 | protein-coding |
| Zfp597 | zinc finger protein 597 | NM_153732 | protein-coding |
| Zscan21 | zinc finger and SCAN domain containing 21 | NM_001012021 | protein-coding |