Table 5.

Over- and under-accumulated chloroplast-encoded proteins in the clpc1 mutant and its complementation lines

		1st batch 4-week-old (LD)			2nd batch (2 biological replicates) 2-week-old (LD)			Nishimura et al (2013) 6-week-old (SD)
SYMBOL	ID	clpc1/WS	ΔN/WS	CP/WS	clpci/ws	ΔN/WS	CP/WS	clpc1–1/wt
a. over-accumulated
RPS4	ATCG00380.1	6.5 ± 0.4	4.9 ± 0.3	0.7 ± 0.1	1.8 ± 0.2	1.9 ± 0.0	0.8 ± 0.1	18.6
CLPP1	ATCG00670.1	4.7 ± 0.3	3.2 ± 0.1	1.0 ± 0.2	1.5 ± 0.0	1.2 ± 0.2	0.9 ± 0.2	1.2
RPS15	ATCG01120.1	3.4 ± 0.3*	2.8 ± 0.2	0.8 ± 0.1	1.7 ± 0.5	1.4 ± 0.1	1.1 ± 0.4	1.0
RPL22	ATCG00810.1	3.4 ± 0.3*	2.9 ± 0.3	0.9 ± 0.1	2.1 ± 0.1*	1.9 ± 0.1	1.0 ± 0.0	n.a
RPS8	ATCG00770.1	3.3 ± 0.4	2.5 ± 0.4	0.8 ± 0.1	1.8 ± 0.5	1.5 ± 0.2	1.0 ± 0.1	10.7
RPOB	ATCG00190.1	3.3 ± 0.6*	3.9 ± 0.9	1.3 ± 0.1	1.5 ± 0.0*	1.7 ± 0.0	1.6 ± 0.2	n.a
RPS18	ATCG00650.1	3.2 ± 0.4*	2.6 ± 0.1	0.8 ± 0.1	1.6 ± 0.1*	1.7 ± 0.1	1.0 ± 0.2	n.a
RPS2	ATCG00160.1	3.2 ± 0.1	2.8 ± 0.1	0.9 ± 0.1	1.6 ± 0.6	1.5 ± 0.4	0.9 ± 0.2	4.5
RPS7	ATCG00900.1	3.1 ± 0.2	2.6 ± 0.2	0.8 ± 0.1	1.6 ± 0.2	1.5 ± 0.1	1.0 ± 0.3	175.6
RPS3	ATCG00800.1	3.0 ± 0.2*	2.5 ± 0.2	1.0 ± 0.1	1.8 ± 0.0*	1.7 ± 0.0	0.8 ± 0.1	0.9
RPOA	ATCG00740.1	3.0 ± 0.4*	3.0 ± 0.2	0.9 ± 0.1	2.0 ± 0.1*	1.9 ± 0.1	1.5 ± 0.1	n.a
RPS14	ATCG00330.1	2.9 ± 0.6	2.3 ± 0.4	0.9 ± 0.1	1.0 ± 0.7	1.4 ± 0.2	1.2 ± 0.4	n.a
RPL20	ATCG00660.1	2.7 ± 0.5*	2.8 ± 0.6	0.8 ± 0.1	1.9 ± 1.1*	1.5 ± 0.1	3.6 ± 2.3	n.a
RPL14	ATCG00780.1	2.6 ± 0.2	2.7 ± 0.3	0.9 ± 0.1	1.9 ± 0.2	1.7 ± 0.2	0.5 ± 0.0	1.6
RPS19	ATCG00820.1	2.6 ± 0.5*	2.3 ± 0.4	0.8 ± 0.1	2.5 ± 0.8*	1.5 ± 0.1	1.2 ± 0.1	n.a
ACCD	ATCG00500.1	2.5 ± 0.2*	2.2 ± 0.2	1.0 ± 0.1	1.5 ± 0.1	1.3 ± 0.1	0.8 ± 0.0	n.a
RPL16	ATCG00790.1	2.2 ± 0.2*	2.1 ± 0.1	1.0 ± 0.1	1.3 ± 0.2	1.2 ± 0.0	1.7 ± 0.1	n.a
RPOC2	ATCG00170.1	n.a	n.a	n.a	1.5 ± 0.1	1.6 ± 0.0	1.5 ± 0.3	n.a
b. under-accumulated
PSAB	ATCG00340.1	0.4 ± 0.1*	0.5 ± 0.1	1.1 ± 0.1	0.6 ± 0.1*	0.7 ± 0.1	2.6 ± 0.6	n.a
PSBC	ATCG00280.1	0.4 ± 0.1*	0.5 ± 0.1	1.0 ± 0.1	0.6 ± 0.1*	0.7 ± 0.0	2.9 ± 0.1	n.a
PSAA	ATCG00350.1	0.4 ± 0.1*	0.5 ± 0.1	1.2 ± 0.1	0.6 ± 0.2	0.8 ± 0.3	2.6 ± 1.0	n.a
PETB	ATCG00720.1	0.4 ± 0.1	0.5 ± 0.1	1.2 ± 0.1	0.4 ± 0.0	0.5 ± 0.0	1.2 ± 0.1	1.0
PSBA	ATCG00020.1	0.3 ± 0.1*	0.6 ± 0.1	1.0 ± 0.1	0.7 ± 0.1	0.7 ± 0.1	2.3 ± 0.2	n.a
PSBD	ATCG00270.1	0.3 ± 0.1*	0.5 ± 0.1	1.0 ± 0.1	0.8 ± 0.1	0.8 ± 0.0	2.8 ± 0.1	n.a
PSBB	ATCG00680.1	0.3 ± 0.1*	0.5 ± 0.1	1.1 ± 0.1	0.6 ± 0.1*	0.7 ± 0.1	2.2 ± 0.5	n.a
PSBH	ATCG00710.1	0.3 ± 0.1*	0.5 ± 0.1	0.8 ± 0.1	0.3 ± 0.0*	0.5 ± 0.0	0.8 ± 0.0	n.a
PSBE	ATCG00580.1	0.3 ± 0.1*	0.5 ± 0.1	0.9 ± 0.1	0.8 ± 0.2	0.7 ± 0.2	2.2 ± 0.3	n.a
PSAC	ATCG01060.1	0.2 ± 0.1*	0.3 ± 0.1	1.0 ± 0.1	0.2 ± 0.0*	0.3 ± 0.0	1.0 ± 0.0	n.a

Notes: See notes of Table 1