Table 2.
Composition of ITS1 amplicon libraries sequenced by Illumina MiSeq.
| Mussel Batch | Sample Type | Site | Primers | Miseq Library (number of OTUs) |
|---|---|---|---|---|
| Tamar 2012 | DNA from spores isolated from infected mussels (n = 6) | Cremyll Ferry,Tamar | Pr4-5 | TAM-1 |
| Tamar 2013–A | DNA and cDNA from PCR + ve, histology –ve mussels (n = 33) | Cremyll Ferry,Tamar | Pr4-5 | TAM-2 |
| MartDBITS | TAM-3 | |||
| Tamar 2013–B | DNA and cDNA from PCR + ve, histology + ve mussels (n = 9) | Cremyll Ferry,Tamar | Pr4-5 | TAM-2 |
| MartDBITS | TAM-4 | |||
| Tamar 2015 | DNA from PCR + ve mussels (n = 4) | Jupiter Point, Tamar | Pr4-5 | TAM-2 |
| Sweden 2015 | DNA from diseased (histology + ve) mussels (n = 20) | Gothenburg, Sweden | Pr4-5 | SWE-1 |
| MartDBITS | SWE-2 |