Table 3.
Reads filter and mapping summary.
| Sample ID | Raw reads | Clean reads | Clean ratio (%) | rRNA trimmed∗ | rRNA ratio (%) | Mapped reads | Mapping ratio (%) |
|---|---|---|---|---|---|---|---|
| LFTS.1 | 75,592,986 | 62,250,244 | 82.35 | 62,084,744 | 0.27 | 50,361,708 | 81.12 |
| LFTS.2 | 88,617,414 | 74,168,527 | 83.70 | 73,875,095 | 0.40 | 57,729,508 | 78.14 |
| LFTS.3 | 83,525,778 | 65,120,752 | 77.96 | 64,996,175 | 0.19 | 48,378,447 | 74.43 |
| STHS.1 | 100,297,264 | 85,223,789 | 84.97 | 84,220,736 | 1.18 | 59,272,741 | 70.38 |
| STHS.2 | 80,848,034 | 66,088,476 | 81.74 | 65,911,628 | 0.27 | 52,818,507 | 80.14 |
| STHS.3 | 83,364,558 | 71,214,729 | 85.43 | 71,075,656 | 0.20 | 56,545,968 | 79.56 |
| TS.1 | 78,883,006 | 65,776,973 | 83.39 | 65,562,800 | 0.33 | 51,766,219 | 78.96 |
| TS.2 | 70,533,752 | 53,370,250 | 75.67 | 52,620,265 | 1.41 | 35,919,719 | 68.26 |
| TS.3 | 57,254,426 | 47,545,827 | 83.04 | 47,223,003 | 0.68 | 35,703,658 | 75.61 |
∗rRNA trimmed reads are data which non-alignment to rRNA database of sheep. Clean ratio = (clean reads/raw reads)%; rRNA ratio = [(clean reads - rRNA trimmed)/clean reads]%; Mapping ratio = mapped reads/all reads.