Table 3.

Rhesus monkey oocyte and early cleavage-stage embryo libraries

Study	Library ID	Sample Type	Aligned Reads, M	MXIST FPKM	RPS4Y1 FPKM	RPS4Y2 FPKM	CountHet	SNPs w/≥10 Reads, n*
GSE86938 oocytes	SRR4242895	GV	6.83	0.0	1.3	0.4		0
	SRR4242896		6.87	0.0	0.3	0.0		0
	SRR4242897		7.05	0.0	1.0	0.0		0
	SRR4242898	MII	7.97	0.0	0.3	0.0		0
	SRR4242899		5.03	0.0	0.5	0.0		0
	SRR4242900		5.68	0.0	0.0	0.0		0
GSE103313 oocytes	SRR5991098	GV	16.45	0.0	0.0	0.0	1	3
	SRR5991099		17.74	0.0	0.0	0.0	3	3
	SRR5991100	MI	10.74	0.0	0.6	0.2	2	4
	SRR5991101		15.22	0.0	0.1	0.2	2	5
	SRR5991102	MII	18.68	0.0	0.0	0.0	1	3
	SRR5991103		14.76	0.0	0.0	0.0		1
	SRR5991104		20.41	0.0	0.0	0.0	1	2
In-house oocytes	020516.05	MII	27.11	6.9	0.0	0.0	1	7
	020516.06		34.28	0.9	0.1	0.0	1	7
	021916.01		35.15	8.6	0.1	0.0		7
	021916.02		31.07	4.5	0.0	0.0		5
	110515.02		29.83	6.3	0.2	0.3		7
	111815.02		30.28	2.0	0.2	0.2		5
	120115.01		30.49	10.6	0.0	0.0		6
	120115.02		31.98	11.9	0.0	0.0		6
GSE86938 early embryos	SRR4242901	PN	5.61	0.0	0.4	0.0		0
	SRR4242902		6.50	0.0	0.0	0.0		0
	SRR4242903		6.60	0.0	0.0	0.0		0
	SRR4242904	2C	4.93	0.0	0.0	0.0		0
	SRR4242905		5.75	0.0	0.4	0.0		0
	SRR4242906		7.46	0.0	0.3	0.7		0
	SRR4242907	4C	5.47	0.1	0.0	0.0		0
	SRR4242908		4.41	0.0	0.5	0.0		0
GSE103313 early embryos	SRR5991105	PN	8.00	0.0	0.0	0.0	1	5
	SRR5991106		5.18	0.0	0.0	0.2	1	5
	SRR5991107		8.70	0.0	0.9	0.9	1	6
	SRR5991108	2C	12.31	0.0	0.2	0.4	1	6
	SRR5991109		8.30	0.0	0.0	0.0	1	4
	SRR5991110	4C	10.37	0.0	0.3	0.1	1	4
	SRR5991111		7.24	0.0	0.5	1.2	1	4
	SRR5991112		11.14	0.0	0.1	0.1		5

Sample types are germinal vesicle stage oocyte (GV), meiosis metaphase I and II stage oocytes (MI and MII), and pronucleate 1-cell stage (PN), two-cell (2C), and four-cell (4C) stage embryos.

^*Series GSE86938 has low depth of coverage, limiting detection of mRNAs with informative SNPs.