Table 1.
Method | Definition |
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Family study | Compares the prevalence of a trait of interest in family members of individuals with the trait of interest to family members of those without the trait of interest. |
Twin study | Correlations between monozygotic (MZ) and dizygotic (DZ) twins for a trait of interest are compared to determine the extent to which variation in the trait is due to genetic and environmental factors. Because MZ twins are presumed to share 100% and DZ twins 50% of their genetic makeup, if the correlation for a trait is twice as strong in MZ than DZ twins, genetic factors are implicated. |
Linkage study | Identifies regions of the genome involved in genetic risk for a trait through samples of multiplex families. Does not identify specific genes involved in risk, only chromosomal regions. |
Candidate gene study | Examines the allele frequency of an a priori selected single nucleotide polymorphism (SNP) in individuals with and without a trait of interest. |
Genome-wide association study (GWAS) |
Compares individuals with and without a trait of interest on 300,000 to 1,000,000 genetic markers across the genome simultaneously. Genome-wide statistical significance is indicated by p < 5×10-8. |
Copy number variation (CNV) |
Examines the presence of genomic repeats or deletions in individuals with trait of interest. |
Linkage disequilibrium score regression (LDSC) |
Statistical method used to determine the genetic correlation between traits. |
Polygenic risk score (PRS) | Uses GWAS information from all SNPs to create an individual genetic risk profile for association with a trait. |
High-throughput sequencing | Uses next-generation DNA sequencing techniques to examine variants associated with disease. |
Gene-environment correlation (rGE) |
Environmental factors influence genetic risk for a trait. |
Gene-by-environment interaction (GxE) |
Environmental factors enhance or reduce genetic risk or when genetic risk influences response to an environment. |