Table 1. Proteins Identified in Anti-YFP Immunoprecipitates from Plants Expressing pdNAD-MDH-YFP.
| Accession No. | Identified Proteins (226/242) | P35S:MDH-YFP | ||
|---|---|---|---|---|
| Etiolated | Seedlings | Rosette | ||
| AT3G47520 | pdNAD-MDH | 210 | 102 | 163 |
| ATCG00860 | Chloroplastic Ycf2 | 65 | 14 | 68 |
| AT3G04340 | FtsH extracellular protease family, FtsHi 5, Embryo defective 2458 | 55 | 9 | 59 |
| AT3G01510 | Like SEX4 1 | 9 | 11 | 52 |
| AT1G79560 | FtsH protease 12, Embryo defective 1047, Embryo defective 156, Embryo defective 36 | 38 | 14 | 46 |
| AT5G64580 | FtsH extracellular protease family, FtsHi 4, Embryo defective 3144 | 29 | 8 | 43 |
| AT3G16290 | FtsH extracellular protease family, FtsHi 2, Embryo defective 2083 | 34 | 13 | 41 |
| AT4G23940 | FtsH extracellular protease family, ARC1, FtsHi1 | 21 | 8 | 41 |
| AT4G13670 | Plastid transcriptionally active 5 | 5 | 16 | 30 |
| AT3G23920 | Beta-amylase 1 | 0 | 0 | 12 |
| AT5G53860 | Embryo defective 2737 | 5 | 3 | 10 |
| AT2G40300 | Ferritin 4 | 10 | 3 | 9 |
| AT1G48460 | tRNA-processing ribonuclease BN | 5 | 2 | 7 |
| AT3G56090 | Ferritin 3 | 5 | 0 | 5 |
| AT5G22640 | Embryo defective 1211, Tic100 | 0 | 0 | 5 |
| AT5G63040 | Transmembrane protein | 3 | 2 | 4 |
| AT4G17090 | Beta-amylase 3 | 0 | 0 | 4 |
| AT4G28210 | Embryo defective 1923 | 2 | 2 | 4 |
| AT5G01600 | Ferritin 1 | 8 | 0 | 3 |
| AT5G59500 | Protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase | 3 | 2 | 3 |
| AT3G61780 | Embryo defective 1703 | 0 | 0 | 3 |
| AT1G31330 | Photosystem I subunit F | 0 | 0 | 2 |
| ATCG00900 | Chloroplast ribosomal protein S7 | 0 | 0 | 2 |
| ATCG00830 | Ribosomal protein L2 | 0 | 0 | 2 |
| AT5G14320 | Embryo defective 3137 | 0 | 0 | 2 |
| ATCG00190 | RNA polymerase subunit beta | 2 | 0 | 0 |
| AT5G16130 | Ribosomal protein S7e family protein | 2 | 0 | 0 |
| AT3G18420 | Slow green 1 | 3 | 0 | 0 |
IPs were conducted with anti-YFP beads on extracts of material harvested at three different developmental stages, and the coeluting proteins were identified using LC-MS/MS. Values represent the total spectrum count of peptides matching each protein. Proteins found in the control samples (IPs from wild-type plant extracts) were assumed to be contaminants and excluded. The full data set can be found in Supplemental Data Set 1.