. 2018 Jun 22;30(8):1745–1769. doi: 10.1105/tpc.18.00121

Table 4. Proteins Identified in Anti-HA Immunoprecipitates from Homozygous pdnad-mdh Plants Expressing Noncatalytic Versions of pdNAD-MDH.

Accession No.	Identified Proteins (917/929)	pdnad-mdh^−/−
Accession No.	Identified Proteins (917/929)	pdNAD-MDH WT	pdNAD-MDH R162Q	pdNAD-MDH R234Q	pdNAD-MDH R163Q R234Q
AT3G47520	pdNAD-MDH	96	49	31	22
ATCG00860	Chloroplast Ycf2	283	457	332	405
AT3G04340	FtsH extracellular protease family, FtsHi 5, Embryo defective2458	408	330	210	362
AT1G79560	FtsH protease 12, Embryo defective 1047, Embryo defective 156, Embryo defective 36	373	309	212	317
AT5G64580	FtsH extracellular protease family, FtsHi 4, Embryo defective 3144	221	207	164	159
AT3G16290	FtsH extracellular protease family, FtsHi 2, Embryo defective 2083	125	228	158	179
ATCG01130	Chloroplast Ycf1	70	166	174	223
AT4G23940	FtsH extracellular protease family, ARC1, FtsHi1	153	141	153	109
AT4G02510	Translocon at the outer envelope membrane of chloroplasts 159	25	95	113	133
AT3G01510	Like SEX4 1	159	58	105	23
AT5G53860	Embryo defective 2737	30	54	55	54

The IPs were conducted with anti-HA beads on extracts of rosette leaves, and the coeluting proteins were identified using LC-MS/MS. Values represent the total spectrum count of peptides matching each protein. Proteins found in the control sample (IPs from wild-type [Ler] plant extracts) were assumed to be contaminants and excluded. The full data set can be found in Supplemental Data Set 1.