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. 2018 Sep 17;9:30. doi: 10.1186/s13100-018-0135-2

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© The Author(s). 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Phylogeny of SVA_D elements in hominines. Median-joining networks of the SVA_D SINE-R domains. Networks were rooted on SVA_C and are not drawn to scale. Elements shared between the lineages are shown as fraction of the total number of members of a subfamily. A color code for shared elements is provided at the left. Ovals indicate the major expanding subfamilies in the different lineages: SVA_D elements with characteristic 228 A – 242 G substitutions in gorilla and chimpanzee and SVA_F in humans. The part of the human network displaying the 228 A – 242 G substitutions is marked as well. SVA_E is included in the human network to comprehensively reflect the spectrum of currently active SVA elements. gg – gorilla; pt – chimpanzee; hs – human