. 2018 Jan 30;96(2):375–397. doi: 10.1093/jas/sky020

Table 2.

The P-values and effect estimate (SE) for the markers associated (P ≤ 0.05) with feed efficiency traits using allele substitution effect model

Gene Name	rs#¹	MAF²	ADG³		DMI⁴		MMWT⁵		RFI⁶		RFI_f⁷		BFat⁸
Gene Name	rs#¹	MAF²	P-value	Estimate ± SE	P-value	Estimate ± SE	P-value	Estimate ± SE	P-value	Estimate ± SE	P-value	Estimate ± SE	P-value	Estimate ± SE
SMARCAL1	rs109065702	0.368									0.038	-0.048 ± 0.023
SMARCAL1	rs109808135	0.367									0.043	-0.047 ± 0.023
SMARCAL1	rs110348122	0.367									0.038	-0.048 ± 0.023
SMARCAL1	rs109382589	0.312							0.030	0.051 ± 0.024	0.036	0.048 ± 0.023
SMARCAL1	rs208660945	0.417	0.009	-0.024 ± 0.009					0.041	-0.045 ± 0.022	0.05	-0.042 ± 0.022
LRRIQ3	rs42417924	0.128					0.014	-1.124 ± 0.45
MGAM	rs110632853	0.076			0.032	0.17 ± 0.079
DPP6	rs110519795	0.388					0.030	-0.651 ± 0.3
DPP6	rs132717265	0.468											0.002	-0.267 ± 0.09
CHADL	rs109499238	0.445					0.032	-0.644 ± 0.3
PPM1K	rs134225543	0.086	0.019	0.038 ± 0.016			0.006	1.402 ± 0.512					0.005	-0.394 ± 0.14
ABCG2	rs110362902	0.102					0.016	1.224 ± 0.51
PKD2	rs29010894	0.207									0.044	-0.055 ± 0.027
PKD2	rs43702346	0.114					0.022	1.085 ± 0.47	0.041	0.072 ± 0.035	0.024	0.078 ± 0.034	0.025	-0.29 ± 0.13
EVC2	rs207525537	0.174	0.041	-0.026 ± 0.013
CAST	rs137601357	0.376							0.048	-0.047 ± 0.024	0.046	-0.046 ± 0.023
CAST	rs210072660	0.379							0.019	-0.052 ± 0.022	0.022	-0.05 ± 0.022
CAST	rs384020496	0.096	0.021	0.032 ± 0.014			0.032	0.925 ± 0.43					0.009	0.317 ± 0.12
CAST	rs133057384	0.107							0.044	-0.072 ± 0.036	0.05	-0.067 ± 0.035	0.005	0.366 ± 0.13
CAST	rs110711318	0.087					0.031	1.087 ± 0.503					0.004	0.401 ± 0.14
CNTFR	rs137400016	0.417	0.015	0.023 ± 0.01
ANXA2	rs471723345	0.084							0.049	0.079 ± 0.04
CNGA3	rs43657898	0.405	0.039	0.02 ± 0.01
AFF3	rs42275280	0.080					0.007	-1.105 ± 0.41					0.025	-0.248 ± 0.11
ATP6V1E2	rs43673198	0.278	0.002	-0.034 ± 0.011	0.023	-0.111 ± 0.049
MAPK15	rs110323635	0.373					0.016	0.746 ± 0.309					0.020	0.2 ± 0.086
FAM135B	rs109575847	0.169			0.021	-0.141 ± 0.061	0.037	-0.902 ± 0.43
TG	rs133269500	0.133	0.006	-0.038 ± 0.014			0.051	-0.836 ± 0.43
TG	rs110547220	0.291	0.002	-0.033 ± 0.011
RB1CC1	rs109800133	0.133											0.019	-0.303 ± 0.129
CNTN5	rs42544329	0.431							0.022	0.052 ± 0.022
ELMOD1	rs42235500	0.164											0.018	-0.189 ± 0.08
HMCN1	rs211555481	0.476											0.049	0.163 ± 0.083
HMCN1	rs381726438	0.295	0.033	0.024 ± 0.011
HMCN1	rs209012152	0.348	0.011	0.027 ± 0.01
HMCN1	rs41821600	0.049							0.021	-0.117 ± 0.051	0.024	-0.111 ± 0.049
HMCN1	rs210494625	0.296	0.026	0.025 ± 0.011
HMCN1	rs209439233	0.305	0.033	0.023 ± 0.011
CACNA1G	rs476872493	0.154							0.0001	-0.124 ± 0.032	0.0004	-0.109 ± 0.031
OCLN	rs134264563	0.133							0.05	-0.066 ± 0.033	0.024	-0.074 ± 0.033
IPO11	rs207541156	0.018									0.041	0.177 ± 0.087
GHR	rs385640152	0.157							0.05	-0.06 ± 0.031	0.021	-0.07 ± 0.03
OSMR	rs41947101	0.417									0.05	0.043 ± 0.022
SLC45A2	rs134604394	0.414	0.015	0.026 ± 0.011
SLC45A2	rs41946086	0.484	0.001	-0.04 ± 0.012	0.016	-0.13 ± 0.054	0.027	-0.844 ± 0.38
PCSK6	rs43020736	0.451			0.016	-0.109 ± 0.045	0.011	-0.812 ± 0.32	0.048	-0.046 ± 0.023	0.047	-0.045 ± 0.023
TMEM40	rs133838809	0.216					0.022	0.862 ± 0.375
TMEM40	rs132658346	0.216					0.022	0.862 ± 0.375
PAK1IP1	rs42342962	0.340									0.034	-0.048 ± 0.023
MKI67	rs110216983	0.381			0.021	0.104 ± 0.045	0.030	0.693 ± 0.319	0.014	0.059 ± 0.024	0.025	0.052 ± 0.023
MKI67	rs109930382	0.328			0.007	0.123 ± 0.045	0.024	0.727 ± 0.322	0.009	0.064 ± 0.025	0.016	0.058 ± 0.024
MKI67	rs109558734	0.332			0.006	0.124 ± 0.045	0.020	0.748 ± 0.32	0.007	0.066 ± 0.024	0.013	0.059 ± 0.024	0.039	0.184 ± 0.089
C27H8orf40	rs135814528	0.054					0.002	2.015 ± 0.654
PHYHIPL	rs209765899	0.312							0.003	-0.076 ± 0.025	0.003	-0.074 ± 0.024

¹rs# = a reference SNP ID number assigned by National Center for Biotechnology Information (NCBI).

²MAF = Minor allele frequency.

³ADG = average daily gain: recorded in kg per day from start to end of the finishing period.

DMI⁴ = dry matter intake: recorded in kg per day from start to end of the finishing period.

MMWT⁵ = midpoint metabolic weight.

⁶RFI = residual feed intake expressed kg per day.

⁷RFI_f = residual feed intake adjusted for backfat

⁸BFat = backfat: recorded as fat depth at the end of the finishing period in millimeters.