Table 5.
Gene Name | rs#1 | Genotype | Midpoint Metabolic Weight (kg) | Back fat (mm) | ||||||
---|---|---|---|---|---|---|---|---|---|---|
P-value | LSM ± SE | a2 ± SE | d3 ± SE | P-value | LSM ± SE | a1 ± SE | d2 ± SE | |||
RRP1B | rs43285609 | AA | 85.739 ± 0.381 | -0.135 ± 0.321 | 0.312 ± 0.388 | 0.05 | 7.022 ± 0.183 | 0.019 ± 0.089 | 0.254 ± 0.109* | |
RRP1B | rs43285609 | GA | 86.185 ± 0.381 | 7.257 ± 0.137 | ||||||
RRP1B | rs43285609 | GG | 86.008 ± 0.381 | 6.984 ± 0.151 | ||||||
GALNT13 | rs438856835 | AA | 85.883 ± 0.38 | 0.196 ± 0.962 | 0.828 ± 1.063 | 0.035 | 7.094 ± 0.13 | -0.486 ± 0.274 | 0.77 ± 0.304* | |
GALNT13 | rs438856835 | CA | 86.908 ± 0.38 | 7.378 ± 0.191 | ||||||
GALNT13 | rs438856835 | CC | 86.275 ± 0.38 | 6.122 ± 0.555 | ||||||
SMARCAL1 | rs208660945 | CC | 85.764 ± 0.382 | -0.172 ± 0.297 | 0.219 ± 0.391 | 0.049 | 7.177 ± 0.174 | 0.111 ± 0.083 | 0.203 ± 0.109 | |
SMARCAL1 | rs208660945 | CT | 86.155 ± 0.382 | 7.269 ± 0.141 | ||||||
SMARCAL1 | rs208660945 | TT | 86.109 ± 0.382 | 6.955 ± 0.148 | ||||||
LRRIQ3 | rs42417924 | CC | 0.043 | 86.331 ± 0.38 | -0.857 ± 0.742 | -0.368 ± 0.806 | 7.171 ± 0.132 | -0.013 ± 0.211 | -0.187 ± 0.231 | |
LRRIQ3 | rs42417924 | GC | 85.107 ± 0.38 | 6.971 ± 0.17 | ||||||
LRRIQ3 | rs42417924 | GG | 84.618 ± 0.38 | 7.145 ± 0.427 | ||||||
DPP6 | rs110519795 | AA | 0.05 | 86.44 ± 0.381 | -0.725 ± 0.308* | 0.446 ± 0.395 | 7.178 ± 0.148 | -0.062 ± 0.086 | 0.017 ± 0.112 | |
DPP6 | rs110519795 | AG | 86.161 ± 0.381 | 7.133 ± 0.142 | ||||||
DPP6 | rs110519795 | GG | 84.99 ± 0.381 | 7.054 ± 0.18 | ||||||
DPP6 | rs132717265 | AA | 85.689 ± 0.382 | -0.393 ± 0.313 | -0.015 ± 0.381 | 0.007 | 6.895 ± 0.164 | -0.264 ± 0.086** | -0.067 ± 0.107 | |
DPP6 | rs132717265 | GA | 86.068 ± 0.382 | 7.092 ± 0.138 | ||||||
DPP6 | rs132717265 | GG | 86.476 ± 0.382 | 7.423 ± 0.159 | ||||||
PPM1K | rs134225543 | CC | 0.018 | 85.78 ± 0.383 | 1.013 ± 0.727 | 0.673 ± 0.886 | 0.015 | 7.198 ± 0.129 | -0.521 ± 0.207* | 0.214 ± 0.253 |
PPM1K | rs134225543 | TC | 87.465 ± 0.383 | 6.891 ± 0.194 | ||||||
PPM1K | rs134225543 | TT | 87.806 ± 0.383 | 6.156 ± 0.424 | ||||||
CAST | rs384020496 | AA | 87.727 ± 0.377 | 0.973 ± 0.518 | -0.124 ± 0.751 | 0.014 | 7.465 ± 0.31 | 0.203 ± 0.15 | 0.277 ± 0.214 | |
CAST | rs384020496 | GA | 86.631 ± 0.377 | 7.539 ± 0.199 | ||||||
CAST | rs384020496 | GG | 85.782 ± 0.377 | 7.058 ± 0.13 | ||||||
CAST | rs133057384 | AA | 87.548 ± 0.38 | 0.827 ± 0.731 | -0.102 ± 0.846 | 0.018 | 7.665 ± 0.42 | 0.307 ± 0.207 | 0.088 ± 0.24 | |
CAST | rs133057384 | GA | 86.619 ± 0.38 | 7.447 ± 0.179 | ||||||
CAST | rs133057384 | GG | 85.894 ± 0.38 | 7.052 ± 0.13 | ||||||
CAST | rs110711318 | CC | 85.843 ± 0.38 | 1.273 ± 0.831 | -0.272 ± 0.968 | 0.017 | 7.058 ± 0.131 | 0.37 ± 0.233 | 0.045 ± 0.272 | |
CAST | rs110711318 | TC | 86.843 ± 0.38 | 7.473 ± 0.188 | ||||||
CAST | rs110711318 | TT | 88.388 ± 0.38 | 7.797 ± 0.472 | ||||||
AFF3 | rs42275280 | CC | 0.011 | 84.288 ± 0.382 | -0.992 ± 0.417* | -2.594 ± 1.999 | 6.691 ± 0.242 | -0.238 ± 0.112* | -0.271 ± 0.577 | |
AFF3 | rs42275280 | CT | 82.687 ± 0.382 | 6.658 ± 0.576 | ||||||
AFF3 | rs42275280 | TT | 86.272 ± 0.382 | 7.167 ± 0.13 | ||||||
ERCC5 | rs133716845 | CC | 0.031 | 85.967 ± 0.38 | -0.598 ± 0.34 | 1.054 ± 0.419* | 7.098 ± 0.144 | 0.019 ± 0.096 | 0.066 ± 0.119 | |
ERCC5 | rs133716845 | TC | 86.423 ± 0.38 | 7.182 ± 0.141 | ||||||
ERCC5 | rs133716845 | TT | 84.771 ± 0.38 | 7.135 ± 0.205 | ||||||
MAPK15 | rs110323635 | AA | 0.047 | 85.592 ± 0.382 | 0.811 ± 0.33* | -0.228 ± 0.403 | 6.957 ± 0.148 | 0.185 ± 0.091* | 0.055 ± 0.114 | |
MAPK15 | rs110323635 | GA | 86.175 ± 0.382 | 7.196 ± 0.138 | ||||||
MAPK15 | rs110323635 | GG | 87.213 ± 0.382 | 7.326 ± 0.192 | ||||||
TG | rs133269500 | AA | 0.02 | 82.153 ± 0.379 | -2.021 ± 0.731** | 1.59 ± 0.798* | 6.736 ± 0.437 | -0.214 ± 0.212 | 0.073 ± 0.232 | |
TG | rs133269500 | GA | 85.765 ± 0.379 | 7.024 ± 0.165 | ||||||
TG | rs133269500 | GG | 86.195 ± 0.379 | 7.165 ± 0.131 | ||||||
ELMOD1 | rs42235500 | AA | 85.947 ± 0.382 | -0.039 ± 0.287 | 0.502 ± 1.095 | 0.043 | 6.751 ± 0.192 | -0.2 ± 0.081* | 0.25 ± 0.301 | |
ELMOD1 | rs42235500 | GA | 86.488 ± 0.382 | 7.202 ± 0.314 | ||||||
ELMOD1 | rs42235500 | GG | 86.025 ± 0.382 | 7.151 ± 0.129 | ||||||
UGT3A1 | rs42345570 | AA | 85.329 ± 0.381 | -0.278 ± 0.455 | 0.747 ± 0.512 | 0.027 | 7.009 ± 0.255 | 0.001 ± 0.124 | 0.292 ± 0.143* | |
UGT3A1 | rs42345570 | CA | 86.354 ± 0.381 | 7.3 ± 0.142 | ||||||
UGT3A1 | rs42345570 | CC | 85.884 ± 0.381 | 7.006 ± 0.14 | ||||||
SLC45A2 | rs134604394 | AA | 86.476 ± 0.382 | 0.406 ± 0.348 | 0.081 ± 0.397 | 7.012 ± 0.185 | -0.05 ± 0.097 | 0.128 ± 0.112 | ||
SLC45A2 | rs134604394 | AT | 86.151 ± 0.382 | 7.191 ± 0.137 | ||||||
SLC45A2 | rs134604394 | TT | 85.664 ± 0.382 | 7.113 ± 0.161 | ||||||
PCSK6 | rs43020736 | CC | 0.027 | 86.725 ± 0.38 | -0.824 ± 0.319* | 0.336 ± 0.383 | 7.09 ± 0.16 | -0.041 ± 0.09 | 0.183 ± 0.109 | |
PCSK6 | rs43020736 | TC | 86.237 ± 0.38 | 7.232 ± 0.142 | ||||||
PCSK6 | rs43020736 | TT | 85.078 ± 0.38 | 7.009 ± 0.169 | ||||||
C27H8orf40 | rs135814528 | AA | 0.009 | 85.856 ± 0.379 | 1.856 ± 2.012 | 0.175 ± 2.098 | 0.036 | 7.117 ± 0.128 | -1.284 ± 0.564* | 1.505 ± 0.589* |
C27H8orf40 | rs135814528 | GA | 87.887 ± 0.379 | 7.338 ± 0.215 | ||||||
C27H8orf40 | rs135814528 | GG | 89.569 ± 0.379 | 4.549 ± 1.132 |
1rs# = a reference SNP ID number assigned by National Center for Biotechnology Information (NCBI).
2a = Additive effect of SNP.
3d = Dominance effect of SNP.
*is significant at P < 0.05; **is significant at P < 0.01.