Table 2.
Differential expression of genes in the livers of fattening lambs allowed ADL or RES milk intake during the suckling period
| Gene ID and function | Description | TPMa mean ADL | TPMa mean RES | log2FCb | P-value | FDRc |
|---|---|---|---|---|---|---|
| LOC101110202 | Cytochrome P450 3A24-like | 508 | 749 | 0.433 | 8.45E-08 | 0.0005 |
| CYP2C19 | Cytochrome P450 2C19 | 347 | 819 | 0.708 | 3.48E-05 | 0.0218 |
| CYP3A24 | Cytochrome P450 CYP3A24 | 1,150 | 1,956 | 0.548 | 6.48E-05 | 0.0304 |
| CDC37L1 | Cell division cycle 37 like 1 | 15 | 22 | 0.381 | 2.35E-06 | 0.0026 |
| APOH | Apolipoprotein H | 5,423 | 4,484 | −0.359 | 9.67E-06 | 0.0091 |
| F2 | Coagulation factor II, thrombin | 1,270 | 1,038 | −0.366 | 1.00E-04 | 0.0433 |
| TF | Serotransferrin | 9,775 | 7,643 | −0.420 | 1.75E-05 | 0.0123 |
| GUCY2C | Guanylate cyclase 2C | 5 | 12 | 0.619 | 4.30E-04 | 0.0893 |
| ACSM3 | Acyl-CoA synthetase medium-chain family member 3 | 755 | 604 | −0.382 | 3.00E-04 | 0.0877 |
| ACOT13 | Acyl-CoA thioesterase 13 | 166 | 128 | −0.419 | 4.20E-04 | 0.0893 |
| ACOX3 | Acyl-CoA oxidase 3, pristanoyl | 44 | 28 | −0.561 | 4.80E-04 | 0.0893 |
| FADS6 | Fatty acid desaturase 6 | 186 | 136 | −0.459 | 5.20E-04 | 0.0893 |
| ND3 | NADH dehydrogenase subunit 3 | 1,751 | 1,057 | −0.686 | 3.21E-07 | 0.0005 |
| APOM | Apolipoprotein M | 121 | 96 | −0.392 | 2.30E-04 | 0.0843 |
| ABCA10 | ATP binding cassette subfamily A member 10 | 118 | 96 | −0.364 | 6.50E-04 | 0.0972 |
| CST3 | Cystatin C | 314 | 222 | −0.515 | 5.22E-05 | 0.0280 |
| SERPINA11 | Serpin family A member 11 | 235 | 199 | −0.318 | 4.70E-04 | 0.0893 |
| DNAJA1 | DnaJ heat shock protein family member A1 | 14 | 21 | 0.422 | 4.10E-04 | 0.0893 |
| LOC101105132 | DnaJ homolog subfamily A member 1 | 24 | 37 | 0.430 | 4.20E-04 | 0.0893 |
| LOC105605968 d | DnaJ homolog subfamily A member 1 | 36 | 56 | 0.468 | 5.47E-05 | 0.0280 |
| LOC101101922 d | DnaJ homolog subfamily A member 1 | 29 | 46 | 0.474 | 2.90E-04 | 0.0877 |
| LOC101102122 d | 60S acidic ribosomal protein P1 | 596 | 471 | −0.420 | 3.84E-07 | 0.0005 |
| RPLP1 | Ribosomal protein lateral stalk subunit P1 | 871 | 692 | −0.403 | 1.37E-05 | 0.0110 |
| RPL3 | Ribosomal protein L3 | 548 | 494 | −0.245 | 2.90E-04 | 0.0877 |
| LOC101114033 | 60S ribosomal protein L17 | 208 | 179 | −0.297 | 6.50E-04 | 0.0972 |
| DPYS | Dihydropyrimidinase | 358 | 233 | −0.541 | 4.20E-04 | 0.0893 |
| ACP5 | Acid phosphatase 5, tartrate resistant | 82 | 56 | −0.571 | 3.55E-07 | 0.0005 |
| RBMS2 | RNA binding motif single stranded interacting protein 2 | 8 | 6 | −0.436 | 4.50E-04 | 0.0893 |
| SERINC2 | Serine incorporator 2 | 13 | 28 | 0.633 | 2.40E-04 | 0.0843 |
| GCAT | Glycine C-acetyltransferase | 190 | 139 | −0.454 | 6.60E-04 | 0.0972 |
| NUFIP2 | NUFIP2, FMR1 interacting protein | 16 | 25 | 0.454 | 2.40E-04 | 0.0843 |
| PLXNA2 | Plexin A2 | 4 | 2 | −0.555 | 5.70E-04 | 0.0911 |
| LOC101106024 | Secreted and transmembrane protein 1A-like | 47 | 92 | 0.592 | 3.30E-04 | 0.0893 |
| ELK4 | ELK4, ETS transcription factor | 10 | 14 | 0.402 | 5.40E-04 | 0.0893 |
| EPS8 | Epidermal growth factor receptor pathway substrate 8 | 10 | 14 | 0.363 | 5.40E-04 | 0.0893 |
| C1H21orf33 | Chromosome 1 open reading frame, human C21orf33 | 161 | 126 | −0.399 | 5.00E-04 | 0.0893 |
| LOC101121401 d | Ferritin heavy chain | 273 | 227 | −0.344 | 4.80E-04 | 0.0893 |
| CCDC117 | Coiled-coil domain containing 117 | 16 | 22 | 0.344 | 5.30E-04 | 0.0893 |
aTPM = Transcripts Per Kilobase Million.
bFold change estimates are relative to ADL group, so positive values indicate greater expression in RES lambs.
cFDR = false discovery rate.
dNonexpressed pseudogenes.