Fig. 5.

—Comparison of sex-specific sequences and assemblies. Samples from each sex were compared against the main genome assembly containing data from both sexes. (A) Depth of coverage (i.e., average number of reads mapped to a specific region) of female (in red) and male (in blue) reads compared with the main assembly. Coverage was estimated for windows of 50 kb using Mosdepth (Pedersen and Quinlan 2018) and regions were ordered by female coverage estimates (ascending, left to right). Genome scaffolds with <50 kb were not included in the plot. Y axis was restricted to 200 for better visualization. (B) Number of complete and partial genes identified in each sex-specific assembly.