Table 1. Mean values per cell.

Mean read counts, UMIs and detectable genes per cell at each step in the processing pipeline shown for each time point.

Time point, hpi	Assigned reads	Aligned reads	UMIs	UMIs after excluding rRNA	Genes detectable
36-40	962,253	142,730	7,648	377	212
40-44	1,395,384	292,130	19,069	841	404
44-48	1,128,064	416,588	27,002	1,118	503

UMI, unique molecular identifier.