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. 2018 Jun 21;46(16):8232–8244. doi: 10.1093/nar/gky562

Figure 5.

Figure 5.

RBPJ, SRF, and phased nucleosomes colocalized. (A) Heat map of RBPJ ChIP, SRF ChIP and input DNA densities clustered around RBPJ summits. (B) Heat map of RBPJ ChIP, SRF ChIP and input DNA densities clustered around SRF summits. Note the increase of input DNA density under RBPJ summits and the two peaks of input DNA density at regions where SRF binds without RBPJ (cluster 4). (C) DNA ends densities for input material for DNA ends clusters centered around RBPJ with or without SRF binding. (D) DNA ends densities for input material for DNA ends clusters centered around SRF summits with or without RBPJ binding. (E and F) Plot of RBPJ and SRF ChIP signals relative to input DNA centered at corresponding RBPJ and SRF summits.