Table 3.
Predicted interactions of molecules based on the presence of at least one/ five pair hit(s) revealing them as correlated. Highlighted bold are the molecule type pairs identified as enriched for pair hits in the genome-wide screen and after filtering (Figure 4D) (Transfer RNA (tRNAs), small nuclear RNA (snRNA), Small nucleolar RNAs (snoRNAs), non-coding RNA (ncRNA), microRNA (miRNA), protein coding sequences, Transposable Elements (TE)). Actual molecule pairs predicted to interact based on five or more pair hits are available as Supplementary File 1
| Class | At least 1 pair hit | 5 of more pair hits |
|---|---|---|
| Protein::Protein | 471002 | 70079 |
| Protein::TE | 391524 | 53514 |
| TE::TE | 170575 | 38862 |
| ncRNA::Protein | 12848 | 1234 |
| Protein::tRNA | 11805 | 1110 |
| ncRNA::TE | 7059 | 1158 |
| miRNA::Protein | 4705 | 367 |
| tRNA::TE | 4046 | 307 |
| Protein::snoRNA | 2519 | 195 |
| miRNA::TE | 1706 | 84 |
| snoRNA::TE | 742 | 33 |
| Protein::snRNA | 210 | 12 |
| ncRNA::tRNA | 155 | 4 |
| ncRNA::ncRNA | 103 | 10 |
| tRNA::tRNA | 86 | 1 |
| miRNA::tRNA | 69 | 3 |
| miRNA::ncRNA | 58 | 1 |
| snRNA::TE | 45 | 1 |
| ncRNA::snoRNA | 32 | 0 |
| snoRNA::tRNA | 25 | 0 |
| miRNA::miRNA | 15 | 0 |
| miRNA::snoRNA | 5 | 0 |
| snRNA::tRNA | 3 | 0 |
| ncRNA::snRNA | 1 | 0 |