Table 6:
Proportions of predicted protein and transcript sequences exceeding 50%, 80%, 95%, or 99% coverage in the top BLAST+ hit from the published transcriptome [18], and combined coverage for the top 10 transcript hits.
| Type | Count | Coverage in top transcript hit | Coverage in top 10 transcript hits | ||||||
|---|---|---|---|---|---|---|---|---|---|
| 50%+ | 80%+ | 95%+ | 99%+ | 50%+ | 80%+ | 95%+ | 99%+ | ||
| Protein (similar to known) | 25,846 | 93.6 | 76.7 | 56.5 | 40.7 | 97.5 | 90.3 | 72.7 | 54.2 |
| Transcript (similar to known) | 25,846 | 75.0 | 50.0 | 30.8 | 21.4 | 82.6 | 73.1 | 57.2 | 40.9 |
| Protein (unknown) | 32,456 | 79.9 | 49.8 | 27.1 | 15.8 | 85.7 | 66.3 | 44.4 | 29.9 |
| Transcript (unknown) | 32,456 | 43.6 | 21.5 | 12.1 | 8.61 | 52.6 | 37.3 | 25.4 | 19.1 |
All percentages given to 3 s.f.