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. 2018 Sep 18;6:165. doi: 10.1186/s40168-018-0556-7

Table 1.

Populations (OTUs) and associated genomes (MAGs) implicated in mediating processes in the biogeochemical model

Biogeochemical process Classification OTU/MAG Metabolic versatility (genes)
Iron oxidation Sulfuricella denitrificans/Sideroxydans lithotrophicus ES-1 seq6/bin.59 Sulfur cycling (dsrAB); Denitrification (nosZ)
Sulfur oxidation Sulfuritalea hydrogenivorans seq335/bin.15 Denitrification (nosZ)
Methane oxidation Methylobacter tundripaludum seq172/bin.78 Denitrification (nxrAB, nirK, norBC)
Methanol oxidation Methyloterna versitalis seq3/bin.71 NA
Ammonia oxidation Nitrosospira briensis seq39/bin.19 Denitrification (nirK)
Denitrification Bacteroidetes Various NA
Iron reduction Rhodoferax ferrireducens T118 seq12/bin.4 Denitrification (nxrAB, nirS)
Iron reduction Geobacter seq228_1/bin.34 NA
Sulfate reduction Desulfatirhabdium butyrativorans strain HB1 seq106/bin.25 NA