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. 2018 Sep 18;2018:bay084. doi: 10.1093/database/bay084

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© The Author(s) 2018. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Conceptual overview of the TreeGenes database. The architecture (hardware and software) underlying TreeGenes. There are three distinct servers: database, web and application. The database server, running PostgreSQL, houses Chado and GeoServer. This connects to the web server which houses Tripal, Drupal and the web server software, NGINX, as well as FTP through h5ai. ElasticSearch is installed as an extension module to provide access to indexed content in the database and search indexed content in partner databases (Genome Database for Rosaceae and Hardwood Genomics Web). The web server connects to the app server which hosts Galaxy and gives TreeGenes users access to computational resources.