Table 4.

Assessment of transcription changes of genes with given alterations in the coding sequences

Sample ID	10.PT1	10.PT2	10.PT3	10.PT4	10.PT5	10.PT6	10.MT	5.MT	7.PT1	7.PT2	7.PT3	7.PT4	7.MT	12.PT	12.MT
stopgain	0.6	0.9	0.6	1.9	0.3	1.4	0.2	0.3	0.1		0.1			1.1	0.4
non silent	7.4	8.1	7.5	8.8	4.5	6.9	0.7	0.5	0.5	0.0	0.2	1.3	0.4	Inf	2.1
silent exonic	1.7	1.2	3.8	4.4	1.1	3.0	0.1	0.3	1.1	0.3	0.4	0.6	1.5	8.2	1.2
indels all	0.2	0.6	0.8	0.2	1.0	0.7	0.3	0.3	3.3	0.5	0.4	0.3	0.0	2.3	0.1

Given values are -log10 of p-value from Kolmogorow-Smirnoff test of altered vs non-altered genes (see methods). Bold highlights significant association (values greater than -log10(0.05)). Inf - values greater than 10