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. 2018 Mar 27;40:154–181. doi: 10.3767/persoonia.2018.40.07

Table 1.

Details of the Ceratocystis isolates from the Latin American clade (LAC) and the Asian-Australian clade (AAC) used in the phylogenetic analyses, mating tests and pathogenicity tests in this study.

Species1 Isolate no.2,3 Substrate Country Locality Year collected GenBank accession numbers
ITS-rDNA bt1 tef1 ms204 rpb2
C. adelphaT CBS 115169; CMW 14809; PREM 61152; C1833 Theobroma cacao Ecuador Pichilingue 2001 DQ520637 KJ601509 KJ601516 KJ601563 KJ601599
C. adelpha CBS 152.62; CMW 15051; C940 Theobroma cacao Costa Rica Atlantic side 1962 AY157951 KJ601510 KJ601517 KJ601564 KJ601600
C. albifundus CBS 128992; CMW 4068 Acacia mearnsii South Africa KwaZulu-Natal, Bloemendal 1997 DQ520638 EF070429 EF070400 KY643987 KY644041
C. atroxT CBS 120518; CMW 19385; PREM 59012 Eucalyptus grandis Australia Queensland 2005 NR_136981; EF070415 EF070431 EF070403 KY643976 KY644030
C. atrox CBS 120517; CMW 19383 Eucalyptus grandis Australia Queensland 2006 EF070414 EF070430 EF070402 KY643975 KY644029
C. cacaofunestaT CBS 115172; CMW 26375; C1983; BPI 843740 Theobromae cacao Brazil Rondonia 2002 AY157953 KJ601512 KJ601519 KJ601566 KJ601602
C. cacaofunesta CBS 114722; CMW 14798; C1548; BPI 843730 Theobromae cacao Costa Rica La Lola Experiment Station 1999 AY157952 KJ601511 KJ601518 KJ601565 KJ601601
C. cercfabiensisT CBS 139654; CMW 43029; CERC 2170; PREM 61229 Eucalyptus sp. China HaiNan Province, LinGao County 2013 KP727592 (Group 2, Clone F); KP727593 (Group 2, Clone G); KP727594 (Group 2, Clone K) KP727618 KP727643 KY643963 KY644016
C. cercfabiensis CBS 139656; CMW 42795; CERC 2687 Eucalyptus sp. China GuangDong 2013 same as KP727583 (Group 2, Clone A) KP727619 KP727644 KY643968 KY644022
C. cercfabiensis CMW 42736 Eucalyptus sp. China GuangDong 2013 KP727583 (Group 2, Clone A); KP727584 (Group 1, Clone B) – – – –
C. cercfabiensis CMW 42741 Eucalyptus sp. China GuangDong 2013 KP727586 (Group 2, Clone A); KP727588 (Group 1, Clone E) – – – –
C. cercfabiensis C3301; CERC 2548 Eucalyptus sp. China GuangDong 2013 KY306679 – – – –
C. cercfabiensis C3302; CERC 2549 Eucalyptus sp. China GuangDong 2013 KY306680 – KP727623 – –
C. cercfabiensis CMW 42577; C3305; CERC 2552 Eucalyptus sp. China GuangDong 2013 KY306681 – KP727624 – –
C. cercfabiensis C3356, CERC 2166 Eucalyptus sp. China Hainan 2013 – – – – –
C. cercfabiensis CMW 42489; C3358; CERC 2168 Eucalyptus sp. China Hainan 2013 – – KP727630 – –
C. changhuiT CBS 139797; CMW 43281; CERC 3615; PREM 61241 Colocasia esculenta China YunNan Province, KunMing 2014 KY643884 KY643919 KY643941 KY643962 KY644015
C. changhui CBS 139798; CMW 43272; CERC 3605; PREM 61242 Colocasia esculenta China YunNan Province, KunMing 2015 KY643886 KY643915 KY643937 KY643958 KY644011
C. collisensisT CBS 139679; CMW 42552; CERC 2459; PREM 61232 Cunninghamia lanceolata China FuJian Province, ZhangZhou Region 2013 KP727578 KP727614 KP727639 KY643970 KY644024
C. collisensis CBS 139647; CMW 42554; CERC 2466 Cunninghamia lanceolata China FuJian Province, ZhangZhou Region 2013 KP727580 KP727615 KP727640 KY643972 KY644026
C. colombianaT CBS 121792; CMW 5751; PREM 59434 Coffea arabica Colombia Valle del Cauca 2000 NR_119483; AY177233 AY177225 EU241493 KJ601567 KJ601603
C. colombiana CBS 121791; CMW 5761; PREM 59435 Coffea arabica Colombia – 2000 AY177234 AY177224 EU241492 KJ601568 KJ601604
C. colombiana C1945 Coffea arabica Colombia – 2002
C. corymbiicolaT CBS 127215; CMW 29120; PREM 60431 Corymbia variegata Australia Wedding Bells State Forest, New South Wales 2008 NR_119830; HM071902 HM071914 HQ236453 KY643983 KY644037
C. corymbiicola CBS 127216; CMW 29349; PREM 60433 Eucalyptus pilularis Australia Ingalba State Forest, New South Wales 2008 HM071919 HQ236455 HM071905 KY643984 KY644038
C. curvataT CBS 122603; CMW 22442; PREM 60151 Eucalyptus deglupta Ecuador Salinas 2004 NR_137018; FJ151436 FJ151448 FJ151470 KJ601570 KJ601606
C. curvata CBS 122604; CMW 22435 Eucalyptus deglupta Ecuador Salinas 2004 FJ151437 FJ151449 FJ151471 KJ601569 KJ601605
C. diversiconidiaT CBS 123013; CMW 22445; PREM 60160 Terminalia ivorensis Ecuador Salinas 2004 FJ151440 FJ151452 FJ151474 KJ601571 KJ601607
C. diversiconidia CBS 122605; CMW 22448; PREM 60162 Terminalia ivorensis Ecuador Salinas 2004 FJ151441 FJ151453 FJ151475 KJ601572 KJ601608
C. ecuadorianaT CBS 124020; CMW 22092; PREM 60155 Eucalyptus deglupta Ecuador Salinas 2004 FJ151432 FJ151444 FJ151466 KJ601573 KJ601609
C. ecuadoriana CBS 124022; CMW 22097 Eucalyptus deglupta Ecuador Salinas 2004 FJ151434 FJ151446 FJ151468 KJ601574 KJ601610
C. eucalypticolaT CBS 124016; CMW 11536; PREM 60168 Eucalyptus sp. South Africa KwaZulu-Natal, KwaMbonambi 2002 FJ236723 FJ236783 FJ236753 KJ601576 KJ601612
C. eucalypticola CBS 124019; CMW 10000 Eucalyptus sp. South Africa KwaZulu-Natal, KwaMbonambi 2002 FJ236722 FJ236782 FJ236752 KJ601575 KJ601611
C. ficicolaT CMW 38543; NIAES 20600; C1355; BPI 843724; MAFF 625119 Ficus carica Japan Fukuoka Prefecture 1990 NR_119410 KY685077 KY316544 KY685080 KY685082
C. ficicola CMW 38544 Ficus carica Japan Fukuoka Prefecture 1991 KY685076 KY685078 KY685079 KY685081 KY685083
C. fimbriata CBS 114723; CMW 14799; C1421 Ipomoea batatas USA North Carolina 1998 KC493160 KF302689 KJ631109 KJ601578 KJ601614
C. fimbriata CBS 123010; CMW 1547 Ipomoea batatas Papua New Guinea – 1984 AF264904 EF070443 EF070395 KJ601577 KJ601613
C. fimbriata CMW 46734; P15-31 Ipomoea batatas USA Hawai’i Island, Hawai’i 2015 KY809154 KY809103 KY809116 KY809128 KY809141
C. fimbriata C4135 Ipomoea batatas USA Hawai’i Island, Hawai’i 2016 same as KC493160 – – – –
C. fimbriatomimaT CBS 121786; CMW 24174; PREM 59439 Eucalyptus grandis × E. urophylla Venezuela Portuguesa state, Acarigua 2006 EF190963 EF190951 EF190957 KJ601579 KJ601615
C. fimbriatomima CMW 24377 Eucalyptus grandis × E. urophylla Venezuela Portuguesa state, Acarigua 2006 EF190966 EF190954 KJ601520 KJ601581 KJ601617
C. huliohiaT CBS 142794; CMW 47149; P15-58; PREM 61769; MUCL 56340 Metrosideros polymorpha USA Hōlualoa, North Kona District, Hawai’i 2015 KY809156 KY809105 KY809118 KY809130 KY809143
C. huliohia CBS 142795; CMW 47135; P14-10; PREM 61768; MUCL 56341; C4211 Metrosideros polymorpha USA ‘Opihikao, Puna District, Hawai’i 2014 KY809155 KY809104 KY809117 KY809129 KY809142
C. huliohia CMW 44104; P14-9-1 Metrosideros polymorpha USA ‘Opihikao, Puna District, Hawai’i 2014 same as KY809156 same as KY809105 same as KY809118 same as KY809130 same as KY809143
C. huliohia CMW 46716; P14-14 Metrosideros polymorpha USA Hawaiian Paradise Park, Puna District, Hawai’i 2014 same as KY809156 same as KY809105 same as KY809118 same as KY809130 same as KY809143
C. huliohia CMW 46721; P15-3 Metrosideros polymorpha USA Hilo, South Hilo District, Hawai’i 2014 same as KY809156 same as KY809105 same as KY809118 same as KY809130 same as KY809143
C. huliohia CMW 46738; P15-59; C4215 Metrosideros polymorpha USA Hōlualoa, North Kona District, Hawai’i 2015 same as KY809156 same as KY809105 same as KY809118 same as KY809130 same as KY809143
C. huliohia CMW 47143; P15-33 Metrosideros polymorpha USA Pana’ewa, South Hilo District, Hawai’i 2015 same as KY809156 same as KY809105 same as KY809118 same as KY809130 same as KY809143
C. huliohia C4190 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 same as KY809156 – – – –
C. huliohia C4191 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 same as KY809156 – – – –
C. huliohia C4192 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 same as KY809156 – – – –
C. lariumT CBS 122512; CMW 25434; PREM 60193 Styrax benzoin Indonesia North Sumatra 2007 NR_137016; EU881906 EU881894 EU881900 KY643981 KY644035
C. larium CBS 122606; CMW 25435 Styrax benzoin Indonesia North Sumatra 2007 EU881907 EU881895 EU881901 KY643982 KY644036
C. lukuohiaT CBS 142792; CMW 44102; P14-1-1; PREM 61770; MUCL 56342; C4212 Metrosideros polymorpha USA Leilani Estates, Puna District, Hawai’i 2014 KP203957/KY809157 KY809106 KY809119 KY809131 KY809144
C. lukuohia CMW 44103; P14-6 Metrosideros polymorpha USA Orchidlands Estates, 2014 same as KY809157 same as KY809106 same as KY809119 same as KY809131 same as KY809144
Puna District, Hawai’i
C. lukuohia CMW 44105; P14-12 Metrosideros polymorpha USA Hawaiian Acres, Puna District, Hawai’i 2014 same as KY809157 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CMW 44106; P14-13 Metrosideros polymorpha USA Hawaiian Paradise Park, Puna District, Hawai’i 2014 same as KY809157 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CMW 44107; P14-15 Metrosideros polymorpha USA Hawaiian Acres, Puna District, Hawai’i 2014 same as KY809157 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CBS 142793; CMW 46741; P15-64; PREM 61771; MUCL 56343; C4210 Metrosideros polymorpha USA Nānāwale Estates, Puna District, Hawai’i 2015 KY809158 KY809107 KY809120 KY809132 KY809145
C. lukuohia CMW 47857; P15-11 Metrosideros polymorpha USA Keau’ohana Forest Reserve, Puna District, Hawai’i 2015 same as KY809158 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CBS 142591; CMW 47152; P15-65; PREM 61772; MUCL 56344; C4213 Metrosideros polymorpha USA Waiākea Forest Reserve, South Hilo District, Hawai’i 2015 haplotype A same as KY809157; haplotype C same as KY809158 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CMW 46743; P15-27 Metrosideros polymorpha USA Kopua Farm Lots, Puna District, Hawai’i 2015 haplotype A same as KY809157; haplotype C same as KY809158 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia CMW 47139; P15-17 Metrosideros polymorpha USA Mālama Kî Forest Reserve, Puna District, Hawai’i 2015 haplotype A same as KY809157; haplotype C same as KY809158 same as KY809106 same as KY809119 same as KY809131 same as KY809144
C. lukuohia C4133 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 haplotype A same as KY809157 – – – –
C. lukuohia C4185 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 haplotype A same as KY809157 – – – –
C. lukuohia C4186 Metrosideros polymorpha USA Hawai’i Island, Hawai’i 2016 haplotype A same as KY809157 – – – –
C. mangicolaT CBS 114721; CMW 14797; C1688; PREM 60182 Mangifera indica Brazil São Paulo State 2000 AY953382 EF433307 EF433316 KJ601582 KJ601618
C. mangicola CMW 28907; PREM 60184 Mangifera indica Brazil São Paulo State 2008 FJ200257 FJ200270 FJ200283 KJ601583 KJ601619
C. manginecansT CBS 121659; CMW 13851; PREM 59612 Mangifera indica Oman – 2002 NR_119532; AY953383 EF433308 EF433317 KJ601584 KJ601620
C. manginecans CBS 121660; CMW 13852; PREM 59613 Mangifera indica Oman – 2002 AY953384 EF433309 EF433318 KJ601585 KJ601621
C. mangivoraT CBS 128340; CMW 27305; PREM 60570 Mangifera indica Brazil São Paulo State, Campinas 2001 FJ200262 FJ200275 FJ200288 KJ601587 KJ601623
C. mangivora CBS 600.70; CMW 15052; PREM 60188 Mangifera indica Brazil São Paulo State 1970 EF433298 EF433306 EF433315 KJ601586 KJ601622
C. neglectaT CBS 121789; CMW 17808; PREM 59616 Eucalyptus grandis Colombia – 2004 NR_137552; EF127990 EU881898 EU881904 KJ601588 KJ601624
C. neglecta CMW 18194; PREM 59617 Eucalyptus grandis Colombia – 2004 EF127991 EU881899 EU881905 KJ601589 KJ601625
C. obpyriformisT CBS 122511; CMW 23808; PREM 59796 Acacia mearnsii South Africa Mpumalanga, Piet Retief 2006 EU245003 EU244975 EU244935 KY643978 KY644032
C. obpyriformis CBS 122608; CMW 23807; PREM 59797 Acacia mearnsii South Africa Mpumalanga, Piet Retief 2007 EU245004 EU244976 EU244936 KY643977 KY644031
C. papillataT CBS 121793; CMW 8856; PREM 59438 Citrus × Tangelo hybrid Colombia Caldas 2001 NR_119486; AY233867 AY233874 EU241484 KJ601590 KJ601626
C. papillata CMW 10844; PREM 60172 Coffea arabica Colombia Antioquia 1998 AY177238 AY177229 EU241481 KJ601591 KJ601627
C. pirilliformisT CBS 118128; CMW 6579; PREM 57323 Eucalyptus nitens Australia Australian Capital Territory, Uriarra 2000 NR_119452; AF427105 DQ371653 AY528983 KJ601594 KJ601630
C. pirilliformis CMW 6569; PREM 57322 Eucalyptus nitens Australia Australian Capital Territory, Uriarra 2000 AF427104 DQ371652 AY528982 KY643985 KY644039
C. plataniPT CBS 115162; CMW 14802; C1317 Platanus occidentalis USA Janet Day Plantation, North Carolina 1998 DQ520630 EF070425 EF070396 KJ601592 KJ601628
C. platani CMW 23450 Platanus orientalis Greece Peloponese 2006 KJ631107 KJ601513 KJ601521 KJ601593 KJ601629
C. platani CMW 1896 Platanus sp. Switzerland – – AF395681 KY809113 KY809126 KY809138 KY809151
C. platani CMW 2219 Platanus sp. France Saint-Maurice 1991 AF395679 KY809114 AY528975 KY809139 KY809152
C. platani CMW 9499 Platanus sp. Italy – – KY809159 KY809115 KY809127 KY809140 KY809153
C. platani C1329 Platanus occidentalis USA Bertie, North Carolina 1998 – – – – –
C. platani C1339 Platanus occidentalis USA Sussex, Virginia 1998 same as AY157958 – – – –
C. platani C1342 Platanus occidentalis USA Bertie, North Carolina 1998 – – – – –
C. polychromaT CBS 115778; CMW 11424; PREM 57818 Syzygium aromaticum Indonesia Sulawesi, Touliang Oki 2002 AY528970 AY528966 AY528978 KY643973 KY644027
C. polychroma CBS 115777; CMW 11436; PREM 57819 Syzygium aromaticum Indonesia Sulawesi, Touliang Oki 2003 AY528971 AY528967 AY528979 KY643974 KY644028
C. polychroma CBS 115775; CMW 11449; C2240; PREM 57821 Syzygium aromaticum Indonesia Sulawesi, Touliang Oki 2003 AY528972 AY528968 KY316543 Pending Pending
C. polyconidiaT CBS 122289; CMW 23809; PREM 59788 Acacia mearnsii South Africa Mpumalanga, Piet Retief 2006 EU245006 EU244978 EU244938 KY643979 KY644033
C. polyconidia CBS 122290; CMW 23818; PREM 59789 Acacia mearnsii South Africa Mpumalanga, Piet Retief 2007 EU245007 EU244979 EU244939 KY643980 KY644034
Ceratocystis sp. CBS 115167; CMW 48508; C1809 Syngonium podophyllum USA Florida 2001 AY526295 KY809108 KY809121 KY809133 KY809146
Ceratocystis sp. CBS 114719; CMW 48500; C1717 Syngonium sp. USA Hawai’i 1987 AY526294 KY809110 KY809123 KY809135 KY809148
Ceratocystis sp. CMW 50456; P16-1 Syngonium podophyllum USA Hawai’i Island, Hawai’i 2016 same as AY526294 – – – –
Ceratocystis sp. CMW 50457; P16-2 Syngonium podophyllum USA Hawai’i Island, Hawai’i 2016 same as AY526294 – – – –
Ceratocystis sp. C4118 Syngonium podophyllum USA Hawai’i Island, Hawai’i 2016 same as AY526294 – – – –
Ceratocystis sp. C1774 Syngonium podophyllum USA Florida 2000 AY526295 – – – –
Ceratocystis sp. CBS 115165; CMW 14805/48506; C1780 Xanthosoma sagittifolium Costa Rica Cartago 2001 AY526297 KY809111 KY809124 KY809136 KY809149
Ceratocystis sp. CBS 114718; CMW 14794/48499; C1817 Xanthosoma sp. or C. esculenta Cuba Havana 2001 AY526298 KY809112 KY809125 KY809137 KY809150
C. uchidaeT CBS 115164; CMW 14804/48505; C1714; BPI 843732 Colocasia esculenta USA O’ahu, Hawai’i 1991 AY526306 KY643899 KY643921 KY643943 KY643996
C. uchidae CBS 114720; CMW 14796/48501; C1715; Colocasia esculenta USA Kaua’i, Hawai’i 1988 AY526307 KY643898 KY643920 KY643942 KY643995
BPI 843733
C. uchidae C1931; DAR 58902 Xanthosoma sagittifolium Fiji – 1987 AY526308 – HM569618 – –

1 T = Extype material of Ceratocystis species used in the phylogeneic studies.

2 BPI = US National Fungus Collections, Beltsville, Maryland, USA; C = Personal collection of Tom Harrington, Iowa State University; CBS = Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CERC = China Eucalypt Research Centre (CERC), Chinese Academy of Forestry (CAF), ZhanJiang, GuangDong Province, China; CMW = Tree Pathology Co-operative Program, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; MUCL = Mycothèque de l’Université Catholique de Louvain, Belgium; P = USDA Agricultural Research Service, Hilo, HI; PREM = National Collection of Fungi, Agricultural Research Council, Pretoria, South Africa.

3 C numbers in italics were isolates used in the infertility tests (see Table 4, 5).