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. 2018 Aug 29;92(18):e00980-18. doi: 10.1128/JVI.00980-18

FIG 3.

FIG 3

Phylogenetic analysis of primate cytomegalovirus sequences. The phylogenetic tree was derived from the partial amino acid sequences of the DNA polymerase genes (149 aa) of 50 representatives of primate cytomegaloviruses, using the Bayesian method with the JTT+G model of amino acid evolution. Sequences generated in this study are shown in bold. Posterior probabilities of the Bayesian analysis (>0.9) are shown next to the nodes. The scale bar indicates the number of amino acid substitutions per site. The major clades representing Old World and New World primate families, superfamilies (for OWM), and parvorders are labeled on the right side of the figure. The virus names are associated with their accession numbers. Viruses of the Cercopithecidae comprise those of the chacma (BaCMV NC_027016 [21, 59]) and olive (BaCMV AF387664 [22]) baboons, the moustached guenon (CceCMV1 AY728178), the agile mangabey (CagCMV1 AY608713), the drill (MndCMV AF282941 and MndCMV AF387665 [strain OCOM6-2] [22, 28]), the mandrill (MndCMV AY129399), the African green monkey (CeHV5 AY117754, CeHV5 FJ483969 [strain Colburn], CeHV5 FJ483969 [strain 2715], CaeCMV AF292066, VervetCMV AY049066 [strain CSG], and CeHV3 AY049065 [22, 60]), the cynomolgus macaque (MfasCMV1 JN227533 [strain Ottawa], MfasCMV1 AY728171, and MfasCMV KP796148 [strain Mauritius] [61, 62]), the rhesus macaque (McHV3 AF033184 and McHV3 DQ120516 [isolate CMV 180.92] [63, 64]), and the mantled guereza (CgueCMV1.1 AY129397 and CgueCMV1.2 EU118147 [30]). Viruses of the Hominidae comprise those of the Bornean orangutan (PpygCMV1.1 AY129396), the human (HHV5 M14709 [strain AD169], HHV5 NC_006273 [strain Merlin], HHV5 AY315197 [strain Towne], and HHV5 AC146905 [isolate Toledo] [65–68]), the Western gorilla (GgorCMV2.1 FJ538490 [27]), and the common chimpanzee (PnHV2 AF480884 [strain Heberling], PtroCMV1.1 FJ538485, and PtroCMV AF292063 [27, 66]). Regarding viruses of New World monkeys, in addition to those described in the present study, viruses of the Cebidae comprise those of the capuchin monkey (CebHV1 JQ264772 and CebusHV AF292067 [from Cebus spp.]), the common squirrel monkey (SaHV4 FJ483967 and SscHV AF292065), and the three-striped night monkey (AoHV1 FJ483970).