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. 2018 Sep 19;19:688. doi: 10.1186/s12864-018-5078-y

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — HGT in the Cardinium cSfur genome. a Percentages of nearest neighbors of the 25 genes encoding non-transposases acquired by HGT in Cardinium cSfur genome. b Phylogenetic tree of the genes related to biotin biosynthesis. Ten species harboring all the 6 genes were chosen, the 6 encoding proteins of each genome were concatenated in order and aligned with MAFFT, and then phylogenetic trees were reconstructed using the software MEGA6. c Genes related to glycolysis in the Cardinium cSfur genome and the highest identity between each gene and its homologous ones inside (red) or outside (green) of the Bacteroides phylum (IB or IOB). d The 15 genes encoding transposases aquired by the event of HGT in the Caridnium cSfur genome, the genes marked in the same color are homologous