TABLE 4.

Average sequencing depth of all samples

Consensus segment	Avg sequencing depth (no. of reads) for sample:
	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20
PB2_2013	43,366.63	3,176,994.52	211,699.39	94,110.75	6,312.50	76,066.89	41,121.49	1,849.69	5.13	17.37	20.78	21.16	318,682.62	751.59	22,865.95	137,128.67	123,741.12	11.90	1,562.34	8.39
PB1_2013	4,312.23	956,734.17	4,550.66	52,287.47	1,749.74	51,385.22	7.78	8.09	1,020.84	8.80	7.64	17.54	443,424.91	0.33	25,870.11	92,391.27	122,526.39	16.38	64.04	9.62
PA_2013	6,286.60	1,409,587.03	79.50	3,373.22	4,201.35	29,885.45	97,808.97	1,942.12	5.02	27.80	22.78	15.57	747,723.04	20,806.25	102,977.92	74,182.53	117,628.43	33.59	2,052.82	160.04
NP_2013	8,352.22	828,919.44	1,109,193.05	74,219.91	5,392.38	71,960.99	96,481.43	7,431.13	17.97	175.48	105.13	31.73	947,654.98	14,806.53	44,093.52	220,890.95	175,262.27	37.16	10,432.36	18.79
NS_2013	4,221.86	364,374.34	1,279.36	1,733.17	365.75	11.34	0.84	5,633.65	16.83	12.65	2.68	2.54	269,508.95	10,758.95	39,148.42	17,559.82	55,246.42	12.08	1.79	1.49
MP_2013	5,747.54	1,279,071.59	2,493,897.05	23,211.51	1,385.23	838,214.05	1,970.88	3,199.19	8.04	52.85	24.44	14.89	393,944.12	4,970.60	34,398.93	63,874.87	114,203.92	12.60	1,910.13	80.45
HA_2013	24,865.55	985,219.43	8,491.03	238,632.09	1,470.89	57,589.48	35,977.54	25,961.20	13,059.48	369.46	62.83	124.78	1,809,859.77	35,499.85	131,745.77	537,585.12	541,936.27	75.83	2,794.49	7,102.20
NA_2013	43,580.60	817,996.07	4,326.90	3,945.42	63.52	85,819.60	11,151.14	1,638.34	4.36	4.08	2.59	5.72	187,019.31	4,614.81	19,543.10	24,959.23	45,620.17	7.15	21.91	2.24