Table 1.
Distribution of small RNAs among different types in M. albus.
| Types | Total sRNAs | Unique sRNAs | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| N46 | N47 | N48 | N49 | RPh | N46 | N47 | N48 | N49 | RPh | |
| total | 7313787 (100%) | 8508516 (100%) | 8163350 (100%) | 8826814 (100%) | 8642278 (100%) | 1637015 (100%) | 1792088 (100%) | 1586989 (100%) | 1765914 (100%) | 1926216 (100%) |
| known miRNA | 728682 (9.96%) | 1028910 (12.09%) | 904832 (11.08%) | 720146 (8.16%) | 923123 (10.68%) | 2217 (0.14%) | 2538 (0.14%) | 2248 (0.14%) | 2099 (0.12%) | 2427 (0.13%) |
| rRNA | 308232 (4.21%) | 286785 (3.37%) | 369614 (4.53%) | 523157 (5.93%) | 304582 (3.52%) | 29940 (1.83%) | 28064 (1.57%) | 31052 (1.96%) | 33094 (1.87%) | 27797 (1.44%) |
| tRNA | 1 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (0%) | 1 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (0%) |
| snRNA | 2227 (0.03%) | 2439 (0.03%) | 2035 (0.02%) | 2115 (0.02%) | 2803 (0.03%) | 994 (0.06%) | 1085 (0.06%) | 964 (0.06%) | 1021 (0.06%) | 1344 (0.07%) |
| snoRNA | 6773 (0.09%) | 7134 (0.08%) | 6050 (0.07%) | 6783 (0.08%) | 8260 (0.1%) | 1301 (0.08%) | 1382 (0.08%) | 1208 (0.08%) | 1326 (0.08%) | 1503 (0.08%) |
| repeat | 22383 (0.31%) | 28708 (0.34%) | 23994 (0.29%) | 25530 (0.29%) | 28055 (0.32%) | 7752 (0.47%) | 9122 (0.51%) | 8135 (0.51%) | 9228 (0.52%) | 9453 (0.49%) |
| novel miRNA | 48166 (0.66%) | 71178 (0.84%) | 66860 (0.82%) | 45880 (0.52%) | 65262 (0.76%) | 1295 (0.08%) | 1552 (0.09%) | 1440 (0.09%) | 1322 (0.07%) | 1565 (0.08%) |
| TAS | 87310 (1.19%) | 118079 (1.39%) | 120870 (1.48%) | 94845 (1.07%) | 157397 (1.82%) | 9285 (0.57%) | 11009 (0.61%) | 9743 (0.61%) | 8876 (0.5%) | 12419 (0.64%) |
| others | 6110013 (83.54%) | 6965283 (81.86%) | 6669095 (81.7%) | 7408358 (83.93%) | 7152795 (82.77%) | 1584230 (96.78%) | 1737336 (96.94%) | 1532199 (96.55%) | 1708948 (96.77%) | 1869707 (97.07%) |
The total sRNAs were annotated as known miRNA, rRNA, tRNA, snRNA, snoRNA, repeat, novel miRNA, TAS and others.