Table 4.
Polymorphic SSRs between the A. pseudolaeve Nakai and A. longecassidatum Nakai CP genomes. CP: chloroplast; IGS: intergenic sequence.
| No. | Location | Region | Motif | Repeat Number | |
|---|---|---|---|---|---|
| A. pseudolaeve | A. longecassidatum | ||||
| 1 | trnH-psbA | IGS | A | 9 | 8 |
| 2 | trnK-matK | IGS | T | 13 | 12 |
| 3 | trnK-trnQ | IGS | A | 12 | 10 |
| 4 | trnK-trnQ | IGS | T | 9 | 10 |
| 5 | trnG | intron | T | 15 | 18 |
| 6 | atpF | intron | T | 16 | 14 |
| 7 | psbM-trnD | IGS | T | 16 | 11 |
| 8 | psbM-trnD | IGS | AT | 18 | 12 |
| 9 | trnS-psbZ | IGS | A | 11 | 10 |
| 10 | trnG-trnfM | IGS | A | 18 | 19 |
| 11 | psaA-ycf3 | IGS | T | 9 | 10 |
| 12 | ycf3 | intron | T | 11 | 12 |
| 13 | ycf3 | intron | A | 9 | 8 |
| 14 | rps4-trnT | IGS | A | 12 | 11 |
| 15 | trnF-ndhJ | IGS | T | 8 | 10 |
| 16 | ndhC-trnV | IGS | A | 9 | 11 |
| 17 | ndhC-trnV | IGS | A | 14 | 9 |
| 18 | accD-psaI | IGS | A | 9 | 8 |
| 19 | accD-psaI | IGS | A | 13 | 12 |
| 20 | psaI-ycf4 | IGS | T | 10 | 11 |
| 21 | ycf4-cemA | IGS | T | 10 | 9 |
| 22 | petA-psbJ | IGS | T | 10 | 9 |
| 23 | psbE-petL | IGS | T | 9 | 8 |
| 24 | psbE-petL | IGS | A | 9 | 8 |
| 25 | psbE-petL | IGS | T | 11 | 10 |
| 26 | rps12-clpP | IGS | ATT | 12 | 9 |
| 27 | clpP | intron | A | 13 | 11 |
| 28 | clpP | intron | A | 14 | 11 |
| 29 | rpl16 | intron | A | 12 | 15 |
| 30 | rpl16-rps3 | IGS | T | 11 | 14 |
| 31 | ndhF-trnL | IGS | A | 12 | 11 |
| 32 | ndhF-trnL | IGS | T | 12 | 11 |
| 33 | ccsA-ndhD | IGS | T | 13 | 10 |
| 34 | ndhD-psaC | IGS | A | 8 | 9 |
| 35 | ndhG | Exon | T | 11 | 10 |
| 36 | ndhA | intron | A | 11 | 9 |