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. Author manuscript; available in PMC: 2020 Jan 15.
Published in final edited form as: Neuroimage. 2018 Mar 21;185:906–925. doi: 10.1016/j.neuroimage.2018.03.042

Table 9.

Publicly available computational tools for infant brain MR images.

Tool Functionality Applicable Stage Link
iBEAT Preprocessing, skull stripping, tissue segmentation, image registration, ROI labeling, surface-based analysis (available soon) Infantile, isointense, early-adult http://www.nitrc.org/projects/ibeat
ALFA Skull stripping Infantile http://brainsquare.org
Neoseg Tissue segmentation Infantile https://www.nitrc.org/projects/neoseg
DrawEM Tissue segmentation Infantile https://github.com/MIRTK/DrawEM
MANTiS Tissue segmentation Infantile https://github.com/DevelopmentalImagingMCRI/mantis
INSTAR Joint tissue segmentation and registration Infantile https://www.nitrc.org/projects/instar
dHCP Structural Pipeline Segmentation and surface-based analysis Infantile https://github.com/DevelopingHCP/structural-pipeline