Table 1.
Kit | Sample type | PCR cycles for lib prep | Percent_Duplication (%) | |||
---|---|---|---|---|---|---|
replicate | avg | |||||
1 | 2 | 3 | ||||
NEBa | Input | 22 | 97 | 99 | 97 | 97 |
IP | 99 | 99 | 99 | 99 | ||
NuG/Trub | Input | 8 | 52 | 53 | 52 | 53 |
IP | 36 | 31 | 26 | 31 | ||
SMTerc | Input | 15 | 83 | 86 | 85 | 85 |
IP | 86 | 83 | 68 | 79 | ||
Tru4d | Input | 22 | 67 | 77 | 71 | 72 |
IP | 85 | 82 | 99 | 89 | ||
Tru70e | Input | 19 | 90 | 94 | 92 | 92 |
IP | 98 | 97 | 96 | 97 | ||
SMTseq4f | Input | 11 | 40 | 38 | 40 | 40 |
IP | 60 | 49 | 48 | 52 | ||
SMTseq0.25f | Input | 11 | 37 | 37 | 41 | 38 |
IP | 59 | 50 | 47 | 52 |
aNEBNext® Ultra™ Directional RNA Library Prep Kit for Illumina
bNugen Ovation® RNAseq System v2
cSMARTer® Stranded Total RNA-Seq Kit-Pico Input Mammalian User
dTruSeq® RNA sample preparation v2,4 ng
eTruSeq® RNA sample preparation v2,70 ng
fSMART-Seq v4 Ultra Low Input RNA Kit