Table 3.
Kit | Sample type | Total features of ribosomal RNA | Average CPM of ribosomal RNA | Total features of ribosomal RNA, lincRNA, microRNA | Average CPM of ribosomal RNA, lincRNA, microRNA | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Replicate | Replicate | Replicate | Replicate | ||||||||||
1 | 2 | 3 | 1 | 2 | 3 | 1 | 2 | 3 | 1 | 2 | 3 | ||
NEB | Input | 3 | 3 | 3 | 73.87 | 67.33 | 72.15 | 233 | 186 | 140 | 46.01 | 29.22 | 28.34 |
IP | 3 | 3 | 4 | 14.24 | 6.15 | 7.80 | 128 | 157 | 268 | 78.05 | 28.33 | 34.25 | |
NuG | Input | 8 | 11 | 10 | 5533.70 | 5571.81 | 5603.65 | 552 | 488 | 415 | 272.73 | 274.17 | 276.54 |
IP | 13 | 11 | 17 | 1803.34 | 820.73 | 863.91 | 583 | 593 | 637 | 97.91 | 48.26 | 51.37 | |
SMTer | Input | 8 | 5 | 6 | 4282.62 | 7858.83 | 4641.15 | 440 | 359 | 377 | 247.75 | 429.65 | 261.04 |
IP | 12 | 6 | 17 | 4880.27 | 7906.14 | 3936.78 | 467 | 411 | 599 | 282.51 | 429.64 | 240.08 | |
Tru4 | Input | 17 | 17 | 13 | 232.50 | 120.94 | 169.47 | 804 | 786 | 767 | 13.96 | 7.59 | 10.29 |
IP | 8 | 7 | 19 | 415.93 | 129.19 | 168.59 | 546 | 650 | 927 | 26.49 | 8.94 | 11.45 | |
Tru70 | Input | 6 | 4 | 4 | 102.39 | 28.55 | 58.50 | 410 | 363 | 406 | 6.34 | 2.08 | 3.81 |
IP | 3 | 3 | 4 | 141.53 | 54.91 | 65.21 | 265 | 295 | 341 | 9.24 | 3.97 | 5.10 | |
SMTseq4 | Input | 13 | 13 | 21 | 214.51 | 159.76 | 185.17 | 750 | 764 | 803 | 11.78 | 8.93 | 10.54 |
IP | 7 | 11 | 10 | 851.62 | 63.75 | 92.92 | 844 | 881 | 889 | 46.39 | 5.91 | 8.73 | |
SMTseq0.25 | Input | 6 | 7 | 3 | 224.50 | 191.46 | 235.20 | 531 | 515 | 461 | 12.32 | 10.52 | 13.04 |
IP | 6 | 6 | 7 | 886.27 | 73.72 | 99.28 | 476 | 502 | 457 | 48.03 | 6.43 | 8.88 |