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. 2018 Sep 20;6:e5641. doi: 10.7717/peerj.5641

Table 1. Universal primer pairs used to target the selected regions of the COI and 18S genes.

The COI primers, mlCOIintF and jgHCO2198, target a 313 base pair (bp) region. The 18S rRNA primers, Uni18SF and Uni18SR, target a 425 bp V4 variable region. Illumina Nextera™  library adapters (NexAd) have been added to the primers and are underlined.

Primer Name Target Sequence(adapters underlined) GC%
mlCOIintF_NexAd (Forward) COI 313 bp region 5′ TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG GGW ACW GGW TGA ACW GTW TAY CCY CC 3′ 48.3
jgHCO2198_NexAd (Reverse) COI 313 bp region 5′ GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA G TA IAC YTC IGG RTG ICC RAA RAA YCA 3′ 42.6
Uni18SF_NexAd (Forward) 18S V4 425 bp region 5′ TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG AGG GCA AKY CTG GTG CCA GC 3′ 54.7
Uni18SR_NexAd (Reverse) 18S V4 425 bp region 5′ GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA G GR CGG TAT CTR ATC GYC TT 3′ 49.1