Table 1. Universal primer pairs used to target the selected regions of the COI and 18S genes.
The COI primers, mlCOIintF and jgHCO2198, target a 313 base pair (bp) region. The 18S rRNA primers, Uni18SF and Uni18SR, target a 425 bp V4 variable region. Illumina Nextera™ library adapters (NexAd) have been added to the primers and are underlined.
| Primer Name | Target | Sequence(adapters underlined) | GC% |
|---|---|---|---|
| mlCOIintF_NexAd (Forward) | COI 313 bp region | 5′ TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG GGW ACW GGW TGA ACW GTW TAY CCY CC 3′ | 48.3 |
| jgHCO2198_NexAd (Reverse) | COI 313 bp region | 5′ GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA G TA IAC YTC IGG RTG ICC RAA RAA YCA 3′ | 42.6 |
| Uni18SF_NexAd (Forward) | 18S V4 425 bp region | 5′ TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG AGG GCA AKY CTG GTG CCA GC 3′ | 54.7 |
| Uni18SR_NexAd (Reverse) | 18S V4 425 bp region | 5′ GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA G GR CGG TAT CTR ATC GYC TT 3′ | 49.1 |