Table 1.

The prediction results of SVM, RF and XGB by Pse-in-One feature combinations in NPTest1.

Algorithm	LncRNA feature	Protein feature	AUC	ACC	REC	SPEC	PPV	F1 score
SVM	Kmer	Kmer	0.9540	0.9229	0.9750	0.8703	0.8837	0.9271
SVM	Kmer	AC	0.9523	0.9227	0.9750	0.8699	0.8834	0.9269
SVM	Kmer	PC-PseAAC-General	0.9574	0.9268	0.9669	0.8862	0.8958	0.9300
SVM	DAC	Kmer	0.9572	0.9229	0.9775	0.8677	0.8820	0.9273
SVM	DAC	AC	0.9565	0.9209	0.9698	0.8714	0.8841	0.9250
SVM	DAC	PC-PseAAC-General	0.9595	0.9188	0.9504	0.8870	0.8948	0.9217
SVM	PC-PseDNC-General	Kmer	0.9565	0.9222	0.9735	0.8703	0.8836	0.9264
SVM	PC-PseDNC-General	AC	0.9541	0.9222	0.9739	0.8699	0.8833	0.9264
SVM	PC-PseDNC-General	PC-PseAAC-General	0.9573	0.9249	0.9617	0.8877	0.8965	0.9280
RF	Kmer	Kmer	0.9630	0.9222	0.9750	0.8688	0.8826	0.9265
RF	Kmer	AC	0.9613	0.9214	0.9750	0.8673	0.8814	0.9258
RF	Kmer	PC-PseAAC-General	0.9678	0.9264	0.9709	0.8814	0.8923	0.9299
RF	DAC	Kmer	0.9649	0.9261	0.9753	0.8762	0.8885	0.9299
RF	DAC	AC	0.9629	0.9242	0.9775	0.8703	0.8840	0.9284
RF	DAC	PC-PseAAC-General	0.9671	0.9266	0.9717	0.8810	0.8920	0.9301
RF	PC-PseDNC-General	Kmer	0.9634	0.9224	0.9739	0.8703	0.8836	0.9265
RF	PC-PseDNC-General	AC	0.9612	0.9218	0.9757	0.8673	0.8815	0.9262
RF	PC-PseDNC-General	PC-PseAAC-General	0.9682	0.9273	0.9720	0.8821	0.8930	0.9308
XGB	Kmer	Kmer	0.9670	0.9285	0.9654	0.8911	0.8996	0.9314
XGB	Kmer	AC	0.9657	0.9262	0.9665	0.8855	0.8952	0.9295
XGB	Kmer	PC-PseAAC-General	0.9654	0.9275	0.9654	0.8892	0.8981	0.9305
XGB	DAC	Kmer	0.9669	0.9285	0.9735	0.8829	0.8937	0.9319
XGB	DAC	AC	0.9664	0.9266	0.9709	0.8818	0.8926	0.9301
XGB	DAC	PC-PseAAC-General	0.9685	0.9294	0.9742	0.8840	0.8947	0.9328
XGB	PC-PseDNC-General	Kmer	0.9674	0.9285	0.9654	0.8911	0.8996	0.9314
XGB	PC-PseDNC-General	AC	0.9660	0.9268	0.9617	0.8914	0.8996	0.9296
XGB	PC-PseDNC-General	PC-PseAAC-General	0.9688	0.9288	0.9647	0.8926	0.9008	0.9317