Table 1.
Algorithm | LncRNA feature | Protein feature | AUC | ACC | REC | SPEC | PPV | F1 score |
---|---|---|---|---|---|---|---|---|
SVM | Kmer | Kmer | 0.9540 | 0.9229 | 0.9750 | 0.8703 | 0.8837 | 0.9271 |
SVM | Kmer | AC | 0.9523 | 0.9227 | 0.9750 | 0.8699 | 0.8834 | 0.9269 |
SVM | Kmer | PC-PseAAC-General | 0.9574 | 0.9268 | 0.9669 | 0.8862 | 0.8958 | 0.9300 |
SVM | DAC | Kmer | 0.9572 | 0.9229 | 0.9775 | 0.8677 | 0.8820 | 0.9273 |
SVM | DAC | AC | 0.9565 | 0.9209 | 0.9698 | 0.8714 | 0.8841 | 0.9250 |
SVM | DAC | PC-PseAAC-General | 0.9595 | 0.9188 | 0.9504 | 0.8870 | 0.8948 | 0.9217 |
SVM | PC-PseDNC-General | Kmer | 0.9565 | 0.9222 | 0.9735 | 0.8703 | 0.8836 | 0.9264 |
SVM | PC-PseDNC-General | AC | 0.9541 | 0.9222 | 0.9739 | 0.8699 | 0.8833 | 0.9264 |
SVM | PC-PseDNC-General | PC-PseAAC-General | 0.9573 | 0.9249 | 0.9617 | 0.8877 | 0.8965 | 0.9280 |
RF | Kmer | Kmer | 0.9630 | 0.9222 | 0.9750 | 0.8688 | 0.8826 | 0.9265 |
RF | Kmer | AC | 0.9613 | 0.9214 | 0.9750 | 0.8673 | 0.8814 | 0.9258 |
RF | Kmer | PC-PseAAC-General | 0.9678 | 0.9264 | 0.9709 | 0.8814 | 0.8923 | 0.9299 |
RF | DAC | Kmer | 0.9649 | 0.9261 | 0.9753 | 0.8762 | 0.8885 | 0.9299 |
RF | DAC | AC | 0.9629 | 0.9242 | 0.9775 | 0.8703 | 0.8840 | 0.9284 |
RF | DAC | PC-PseAAC-General | 0.9671 | 0.9266 | 0.9717 | 0.8810 | 0.8920 | 0.9301 |
RF | PC-PseDNC-General | Kmer | 0.9634 | 0.9224 | 0.9739 | 0.8703 | 0.8836 | 0.9265 |
RF | PC-PseDNC-General | AC | 0.9612 | 0.9218 | 0.9757 | 0.8673 | 0.8815 | 0.9262 |
RF | PC-PseDNC-General | PC-PseAAC-General | 0.9682 | 0.9273 | 0.9720 | 0.8821 | 0.8930 | 0.9308 |
XGB | Kmer | Kmer | 0.9670 | 0.9285 | 0.9654 | 0.8911 | 0.8996 | 0.9314 |
XGB | Kmer | AC | 0.9657 | 0.9262 | 0.9665 | 0.8855 | 0.8952 | 0.9295 |
XGB | Kmer | PC-PseAAC-General | 0.9654 | 0.9275 | 0.9654 | 0.8892 | 0.8981 | 0.9305 |
XGB | DAC | Kmer | 0.9669 | 0.9285 | 0.9735 | 0.8829 | 0.8937 | 0.9319 |
XGB | DAC | AC | 0.9664 | 0.9266 | 0.9709 | 0.8818 | 0.8926 | 0.9301 |
XGB | DAC | PC-PseAAC-General | 0.9685 | 0.9294 | 0.9742 | 0.8840 | 0.8947 | 0.9328 |
XGB | PC-PseDNC-General | Kmer | 0.9674 | 0.9285 | 0.9654 | 0.8911 | 0.8996 | 0.9314 |
XGB | PC-PseDNC-General | AC | 0.9660 | 0.9268 | 0.9617 | 0.8914 | 0.8996 | 0.9296 |
XGB | PC-PseDNC-General | PC-PseAAC-General | 0.9688 | 0.9288 | 0.9647 | 0.8926 | 0.9008 | 0.9317 |