Table 3.
Model | LncRNA feature | Protein feature | AUC | ACC | REC | SPEC | PPV | F1 score | TP | FN | FP | TN |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SVM | Kmer | Kmer | 0.7351 | 0.5687 | 0.9629 | 0.1744 | 0.5384 | 0.6906 | 2628 | 101 | 2253 | 476 |
SVM | Kmer | AC | 0.7172 | 0.5381 | 0.9728 | 0.1033 | 0.5203 | 0.6780 | 2655 | 74 | 2447 | 282 |
SVM | Kmer | PC-PseAAC-General | 0.7326 | 0.6357 | 0.9278 | 0.3437 | 0.5857 | 0.7180 | 2532 | 197 | 1791 | 938 |
SVM | DAC | Kmer | 0.7243 | 0.5122 | 0.9849 | 0.0395 | 0.5063 | 0.6688 | 2688 | 41 | 2621 | 108 |
SVM | DAC | AC | 0.7495 | 0.5461 | 0.9589 | 0.1333 | 0.5252 | 0.6787 | 2617 | 112 | 2365 | 364 |
SVM | DAC | PC-PseAAC-General | 0.7088 | 0.6416 | 0.8603 | 0.4228 | 0.5985 | 0.7059 | 2348 | 381 | 1575 | 1154 |
SVM | PC-PseDNC-General | Kmer | 0.7446 | 0.5390 | 0.9703 | 0.1077 | 0.5209 | 0.6779 | 2648 | 81 | 2435 | 294 |
SVM | PC-PseDNC-General | AC | 0.7340 | 0.5388 | 0.9681 | 0.1095 | 0.5208 | 0.6773 | 2642 | 87 | 2430 | 299 |
SVM | PC-PseDNC-General | PC-PseAAC-General | 0.7433 | 0.6299 | 0.9234 | 0.3363 | 0.5818 | 0.7138 | 2520 | 209 | 1811 | 918 |
RF | Kmer | Kmer | 0.8066 | 0.5344 | 0.9791 | 0.0897 | 0.5182 | 0.6777 | 2672 | 57 | 2484 | 245 |
RF | Kmer | AC | 0.8089 | 0.5153 | 0.9893 | 0.0414 | 0.5079 | 0.6712 | 2700 | 29 | 2616 | 113 |
RF | Kmer | PC-PseAAC-General | 0.8026 | 0.6227 | 0.9377 | 0.3078 | 0.5753 | 0.7131 | 2559 | 170 | 1889 | 840 |
RF | DAC | Kmer | 0.7974 | 0.5732 | 0.9582 | 0.1883 | 0.5414 | 0.6918 | 2615 | 114 | 2215 | 514 |
RF | DAC | AC | 0.7935 | 0.5472 | 0.9739 | 0.1205 | 0.5255 | 0.6826 | 2658 | 71 | 2400 | 329 |
RF | DAC | PC-PseAAC-General | 0.7956 | 0.6143 | 0.9428 | 0.2858 | 0.5689 | 0.7096 | 2573 | 156 | 1949 | 780 |
RF | PC-PseDNC-General | Kmer | 0.8106 | 0.5489 | 0.9721 | 0.1256 | 0.5264 | 0.6830 | 2653 | 76 | 2386 | 343 |
RF | PC-PseDNC-General | AC | 0.8071 | 0.5164 | 0.9890 | 0.0439 | 0.5084 | 0.6716 | 2699 | 30 | 2609 | 120 |
RF | PC-PseDNC-General | PC-PseAAC-General | 0.8036 | 0.6271 | 0.9369 | 0.3173 | 0.5785 | 0.7153 | 2557 | 172 | 1863 | 866 |
XGB | Kmer | Kmer | 0.8032 | 0.6423 | 0.9391 | 0.3455 | 0.5893 | 0.7242 | 2563 | 166 | 1786 | 943 |
XGB | Kmer | AC | 0.7930 | 0.6452 | 0.9292 | 0.3613 | 0.5926 | 0.7237 | 2536 | 193 | 1743 | 986 |
XGB | Kmer | PC-PseAAC-General | 0.7971 | 0.6582 | 0.9270 | 0.3895 | 0.6029 | 0.7306 | 2530 | 199 | 1666 | 1063 |
XGB | DAC | Kmer | 0.7938 | 0.6201 | 0.9483 | 0.2920 | 0.5725 | 0.7140 | 2588 | 141 | 1932 | 797 |
XGB | DAC | AC | 0.8205 | 0.6311 | 0.9501 | 0.3122 | 0.5800 | 0.7203 | 2593 | 136 | 1877 | 852 |
XGB | DAC | PC-PseAAC-General | 0.8046 | 0.6192 | 0.9468 | 0.2916 | 0.5720 | 0.7132 | 2584 | 145 | 1933 | 796 |
XGB | PC-PseDNC-General | Kmer | 0.7875 | 0.6476 | 0.9380 | 0.3572 | 0.5934 | 0.7269 | 2560 | 169 | 1754 | 975 |
XGB | PC-PseDNC-General | AC | 0.7776 | 0.6526 | 0.9201 | 0.3851 | 0.5994 | 0.7259 | 2511 | 218 | 1678 | 1051 |
XGB | PC-PseDNC-General | PC-PseAAC-General | 0.7914 | 0.6575 | 0.9322 | 0.3829 | 0.6017 | 0.7313 | 2544 | 185 | 1684 | 1045 |