Table 2.
Haplotype and genotype composition, number of private haplotypes (Nph) and genotypes (Npg), gene diversity (h), as well as nucleotide diversity (π) for the 29 populations of Saxifraga sinomontana based on cpDNA and internal transcribed spacer (ITS) datasets.
| cpDNA | ITSa | |||||||
|---|---|---|---|---|---|---|---|---|
| Pop. | Haplotype composition | Nph | h | π (×100) | Genotype composition | Npg | h | π (× 100) |
| AB | H1(1), H2(1), H3(1), H4(1), H5(1), H6(1), H7(1), H8(1), H9(1), H10(1), H11(1) | 4 | 1.0000 | 0.0161 | T1/T1(2), T1/T2(1), T1/T3(2), T1/T4(1), T1/T6(1), T1/T7(1), T1/T8(1), T1/T9(1), T5/T6(1) | 4 | 0.7056 | 0.3303 |
| BS | H4(1), H7(1), H10(2), H12(1), H13(1), H14(2), H15(1), H16(1), H17(1), H18(1), H19(1) | 2 | 0.9744 | 0.0143 | T1/T6(1), T1/T11(2), T1/T13(1), T1/T16(1), T6/T10(1), T6/T12(1), T6/T14(3), T6/T17(1), T11/T18(1), T15/T16(1) | 6 | 0.8831 | 0.5158 |
| BR | H20(5), H21(1), H22(4), H23(1) | 2 | 0.7091 | 0.0116 | T1/T19(4), T1/T20(6), T19/T21(1) | 3 | 0.6970 | 0.4293 |
| CYA | H8(2), H10(1), H15(1), H17(4), H18(1), H24(1), H25(2), H26(3), H27(2) | 1 | 0.9118 | 0.0290 | T1/T6(4), T3/T26(1), T4/T22(1), T6/T6(5), T6/T14(2), T6/T24(1), T6/T25(1), T22/T23(1), T26/T27(1) | 6 | 0.7112 | 0.4318 |
| CYU | H5(3), H12(1), H18(4), H28(4), H29(8) | 2 | 0.7737 | 0.0121 | T1/T16(4), T1/T28(3), T1/T31(1), T3/T16(2), T3/T28(1), T11/T16(6), T11/T29(2), T28/T30(1) | 7 | 0.8256 | 0.2122 |
| CDU | H3(4), H10(1), H15(3), H17(4), H18(2), H30(7), H31(1), H52(1) | 2 | 0.8538 | 0.0175 | T1/T6(1), T6/T6(18), T6/T32(3), T6/T81(1) | 1 | 0.2048 | 0.0590 |
| CDUO | H15(4), H17(6), H18(5), H32(5) | 0 | 0.7842 | 0.0019 | T1/T4(8), T1/T6(1), T1/T44(1), T1/T107(1), T6/T6(1), T6/T32(1), T6/T110(1), T6/T111(1), T6/T112(2), T6/T113(1), T7/T112(1), T108/T109(1) | 7 | 0.8436 | 0.4994 |
| CN | H19(1), H25(1), H33(1) | 0 | 1.0000 | 0.0154 | T3/T36(1), T33/T34(1), T35/T36(1) | 3 | 0.9333 | 0.3347 |
| DR | H34(1) | 1 | 1.0000 | 0.0000 | T1/T6(1) | 0 | 1.0000 | 0.6974 |
| DB | H18(2), H35(2), H36(1), H37(7), H38(1) | 4 | 0.7051 | 0.0180 | T1/T39(1), T1/T42(5), T3/T42(2), T37/T38(1), T40/T41(1), T42/T42(2), T42/T43(1) | 5 | 0.7477 | 0.4944 |
| DG | H15(2), H18(9), H32(2), H39(4), H40(2), H41(1), H42(1), H43(1), H44(1) | 5 | 0.8221 | 0.0056 | T1/T1(3), T1/T6(1), T1/T11(3), T1/T15(2), T1/T18(1), T1/T27(2), T1/T44(1), T1/T45(1), T1/T46(1), T1/T47(1), T1/T49(1), T6/T11(2), T11/T15(1), T11/T44(1), T11/T48(1), T27/T50(1) | 9 | 0.7797 | 0.2958 |
| DQIN | H45(6), H46(7), H47(8), H48(2) | 4 | 0.7431 | 0.0049 | T3/T6(5), T3/T51(1), T3/T54(1), T6/T6(7), T6/T51(3), T6/T52(2), T6/T53(1), T6/T54(1), T55/T56(1), T56/T57(1) | 8 | 0.6570 | 0.5115 |
| DQING | H15(1), H17(5) | 0 | 0.3333 | 0.0015 | T1/T6(1), T3/T59(1), T3/T61(2), T58/T59(1), T59/T60(1) | 4 | 0.8939 | 0.6593 |
| DRI | H49(18) | 1 | 0.0000 | 0.0000 | T62/T62(13), T62/T63(4), T63/T63(1) | 3 | 0.2857 | 0.0797 |
| GZ | H39(1), H50(1), H51(1), H52(1) | 1 | 1.0000 | 0.0313 | T1/T1(2), T1/T64 (1), T65/T66(1) | 2 | 0.6429 | 0.2341 |
| GD | H3(1), H8(3), H27(1), H53(2), H54(1) | 2 | 0.8271 | 0.0162 | T1/T46(1), T1/T67(5), T3/T67(1), T46/T46(1) | 3 | 0.7250 | 0.2301 |
| HY | H4(3), H5(1), H13(1), H18(1), H32(3), H55(3), H56(1), H57(1), H58(1), H59(1), H60(1) | 6 | 0.9338 | 0.0237 | T1/T1(1), T1/T3(2), T1/T6(2), T1/T7(1), T1/T65(2), T1/T69(1), T1/T71(1), T3/T6(1), T3/T7(2), T3/T30(1), T3/T70(1), T6/T68(1), T70/T72(1) | 7 | 0.8449 | 0.3324 |
| JD | H15(4), H17(1), H18(1), H51(1), H52(1), H61(1), H62(2), H63(1), H64(1), H65(1), H66(1) | 6 | 0.9333 | 0.0329 | T1/T6(6), T1/T15(3), T6/T6(3), T6/T22(1), T6/T29(1), T6/T73(1) | 3 | 0.6690 | 0.4332 |
| KD | H3(1), H18(3), H24(2), H32(4), H33(3), H39(1), H67(1), H68(3), H69(1) | 2 | 0.9064 | 0.0104 | T1/T29(1), T1/T42(6), T1/T78(2), T1/T79(2), T7/T42(1), T42/T42(1), T42/T74(1), T42/T75(1), T42/T80(1), T43/T79(1), T75/T79(1), T76/T77(1) | 10 | 0.8165 | 0.4674 |
| LZI | H12(1), H70(1) | 1 | 1.0000 | 0.0153 | T36/T83(1), T80/T82(1) | 2 | 1.0000 | 0.8136 |
| LZHA | H17(6), H71(4) | 0 | 0.5333 | 0.0130 | T1/T60(1), T1/T86(2), T1/T87(1), T3/T3(1), T3/T40(1), T30/T60(1), T30/T83(1), T30/T86(1), T84/T85(1) | 8 | 0.9158 | 0.2782 |
| MQIN | H72(1), H73(2), H74(1) | 2 | 0.8333 | 0.0040 | T1/T3(1), T3/T6(2), T3/T11(1) | 1 | 0.7500 | 0.4134 |
| MQU | H24(1), H73(1), H75(2), H76(1), H77(1), H78(1), H79(1) | 5 | 0.9643 | 0.0313 | T1/T1(1), T1/T6(3), T1/T88(2), T1/T89(1), T3/T7(1) | 2 | 0.7333 | 0.3359 |
| MZGK | H18(1), H25(1), H32(1), H80(8), H81(1) | 2 | 0.5758 | 0.0090 | T1/T92(1), T1/T96(1), T1/T98(1), T3/T82(1), T3/T91(1), T3/T93(1), T3/T94(1), T3/T95(1), T3/T97(1), T3/T99(1), T21/T91(1), T25/T90(1) | 12 | 0.9094 | 0.5988 |
| NQ | H5(5), H9(1), H10(3), H20(2), H23(2), H71(1), H82(1), H83(1), H84(1) | 3 | 0.8897 | 0.0197 | T1/T33(2), T1/T47(1), T1/T100(1), T1/T101(2), T1/T102(1), T3/T33(1), T3/T104(1), T3/T105(1), T18/T33(1), T33/T100(2), T33/T103(1), T100/T104(1), T102/T103(1), T102/T104(1) | 13 | 0.8948 | 0.2787 |
| QML | H15(2), H85(2) | 1 | 0.6667 | 0.0425 | T1/T1(1), T1/T6(2), T6/T32(1) | 0 | 0.6786 | 0.4334 |
| SD | H67(1), H86(1) | 1 | 1.0000 | 0.0007 | T76/T106(2) | 1 | 0.6667 | 0.2789 |
| YS | H5(1), H15(4), H17(4), H18(5), H19(1) | 0 | 0.7905 | 0.0050 | T1/T1(1), T1/T4(1), T1/T6(3), T1/T16(3), T1/T115(1), T3/T114(1), T6/T6(2), T6/T114(2), T16/T116(1) | 4 | 0.7931 | 0.4704 |
| ZK | H4(1), H10(2), H32(2), H87(2), H88(3), H89(1) | 3 | 0.8909 | 0.0156 | T1/T3(3), T1/T83(1), T2/T3(2), T2/T23(1), T3/T3(1), T3/T6(1), T3/T29(1), T3/T109(1) | 5 | 0.7662 | 0.3001 |
| Mean | 0.8064 | 0.0144 | 0.7577 | 0.3948 | ||||
a
Gene diversity (h) and nucleotide diversity (π) of ITS dataset were computed based on sequence types isolated by PHASE.
Population codes are the same as those given in Table 1.