Table 1.
CSE lineage | SW lineage | |
---|---|---|
Total number of clean reads | 47,880,822 | 122,587,340 |
Total length of clean reads (bp) | 4,309,273,980 | 12,258,734,000 |
Total numbers of contigs | 101,421 | 138,294 |
N50 value of contigs | 1001 | 926 |
Mean length of contigs (bp) | 413 | 377 |
Q20 percentage (%) | 97.98% | 98.51% |
GC percentage (%) | 45.13% | 46.10% |
Total numbers of unigenes | 52,838 | 65,197 |
N50 value of unigenes (bp) | 1667 | 1841 |
Mean length of unigenes (bp) | 1034 | 1095 |
Notes: Q20 percentage denotes the percentage of sequences with sequencing error rate lower than 1%; N50 means that the contig size such that 50% of the entire assembly is contained in contigs equal to or longer than this value, bp = base pair.