Table 2.

Summary of predicted prophages in 7 sequenced TIFN strains

STRAIN	NAME	REGION LENGTH	COMPLETENESS	MOST SIMILAR	DETAILS
TIFN1	proΦ1_1	56.1Kb	intact	Lactococcus phage bIL309	integrase, capsid, tail, portal, terminase, protease
	proΦ1_2	49.2Kb	questionable	Lactococcus phage TP901–1	integrase, transposase, terminase, lysin
TIFN2	proΦ2_1	43Kb	intact	Lactococcus phage bIL309	integrase, capsid, tail, portal, terminase, protease, lysin
	proΦ2_2	57.7Kb	intact	Lactococcus phage bIL309	integrase, tail, portal, terminase, protease
TIFN3	proΦ3	36.8Kb	questionable	–	integrase, transposase
TIFN4	proΦ4_1	44.1Kb	intact	Lactococcus phage bIL309	integrase, capsid, tail, portal, terminase, protease
	proΦ4_2	60Kb	intact	Lactococcus phage bIL309	integrase, tail, portal, terminase, protease
TIFN5	proΦ5_1	47.5Kb	questionable	Lactococcus phage TP901–1	integrase, transposase, terminase
	proΦ5_2	31Kb	intact	Lactococcus phage bIL309	integrase, capsid, tail, portal, terminase, protease
TIFN6	proΦ6_1	31Kb	questionable	Lactococcus phage TP901–1	tail, transposase, terminase, Lysin
	proΦ6_2	60.7Kb	intact	Lactococcus phage bIL309	integrase, capsid, tail, transposase, head, portal, terminase, protease, lysin
TIFN7	proΦ7_2	42.1Kb	questionable	Lactococcus phage phiLC3	capsid, transposase, terminase
	proΦ7_3	43.8Kb	questionable	–	transposase, terminase