Table 4.

Transcripts predicted to encode Polycomb Group (PcG) proteins based on top BLASTX hits to Arabidopsis proteins

Transcript ID	Transcript length (bp)	Putative protein	% identity	e-value	Differentially expresseda
Comp8804_c0_seq1	1271	FIE	74	0	NO
Comp7474_c0_seq1	743	RBR	99.3	7E−99	NO
Comp7474_c0_seq4	281	RBR	100	1E−57	NO
Comp7474_c0_seq5	266	RBR	98.86	2E−51	NO
Comp7474_c0_seq6	252	RBR	100	3E−47	NO
Comp7474_c0_seq7	222	RBR	100	5E−46	NO
Comp22708_c0_seq1	945	MSI1	62	8E−98	Up-regulated in lop138 post-pollination relative to lop138 pre-pollination
Comp22708_c0_seq2	339	MSI1	74.11	9E−59	Up-regulated in lop138 post-pollination relative to lop138 pre-pollination
Comp20599_c0_seq1	355	MSI1	75	7E−10	Up-regulated in lop138 post-pollination relative to lop138 pre-pollination
Comp2957_c0_seq1	1637	MSI1	92.62	0	NO
Comp76669_c0_seq1	280	MSI1	89.25	1E−53	NO
Comp7074_c0_seq1	2434	EZA1/SWINGER	75.55	0	NO
Comp12352_c0_seq1	2455	CLF	68.98	8E− 157	NO
Comp16067_c0_seq1	357	CLF	38.83	1E−10	NO
Comp16067_c0_seq6	233	CLF	64.47	3E−22	NO
Comp16067_c0_seq7	231	CLF	81.58	6E−20	NO
Comp16067_c0_seq8	218	CLF	53.85	2E−14	NO
Comp16067_c0_seq9	216	CLF	60.32	1E−13	NO
Comp16067_c0_seq10	204	CLF	76.47	1E−31	NO
Comp16067_c0_seq11	202	CLF	56.52	7E−05	NO

^a The ‘Differentially expressed’ column indicates whether the transcript was DE at an adjusted p-value of 0.1 in any of the DE analyses performed. The DE analyses were; R35 pre-embryo vs. post-embryo, lop138 pre-pollination vs. post-pollination, lop138 vs. R35 and lop138 vs. A36. More detail on the DE analyses can be found in Table 1