Table 1.
Known DNA-binding motifs enriched in the noncoding regions of the pannier locus
| Category | Allele/species | Upstream intergenic region | Upstream region of the first intron | Downstream region of the first intron |
|---|---|---|---|---|
| Allele-/species-specifically enriched motifs | h C | EcR, Foxo | En, Exd, H, HLH106, Mad, Myc, Mnt, Ss, Pad, Pan, Poxn, Sd, Tgo, Tai, Vvl | Ab, B-H1, Crc, Crol, Dr, Rn, Sd |
| h A | Exd, Pan, Vvl | Ab, Brk, Pnr, Spps, Usp, | Usp | |
| h | Kni, Rn, Sqz | Ab, Ato, Ets21C, Rn, Sqz | Al, B-H1, Lms, Nub, Sqz, Tup | |
| C. sep | Ato, EcR, H, Ss, Tgo | B-H2, Eg, Pnr, Tai, Tgo | Brk, E(spl)mβ, H, Ken, Tai, Tgo | |
| Commonly enriched motifs | H. axy | Ab, Brk, Mad, Taxi, Tgo | Al, Brk, E(spl)m E(spl)mβ, Exd, Hth, Lms, Mad, Tai, Tgo, Tx | Dr, En, Inv, Med, Sens, Slou, Unpg |
| H. axy & C. sep | Mad | Exd, Hth, Lms, Mad, Tai, Tgo | — | |
| Region size (bp) | h C | 38,192 (F2-3)/51,566 (NT6) | 71,107 (F2-3)/76,264 (NT6) | 47,450 (F2-3)/44,236 (NT6) |
| h A | 42,826 | 75,417 | 52,210 | |
| h | 40,778 | 67,340 | 67,340 | |
| C. sep | 20,370 | 56,564 | 18,432 |
Enriched DNA-binding motifs of Drosophila transcription factors involved in wing formation are listed (p < 0.05). The Scalloped binding motif (Sd) discussed in the text is underlined.