Table 2.
Individual breed GWAS results for all genetic variants that reached genome-wide significance following meta-analysis.
| Trait | SNP ID | Meta-analysis P-value | Direction of Effect | AA P-value | BB P-value | CH P-value | LM P-value | SI P-value |
|---|---|---|---|---|---|---|---|---|
| RFI | rs43555985 | 8.28E-06 | −−−−− | 2.14E-01 | 1.18E-01 | 5.30E-01 | 1.24E-03 | 2.39E-03 |
| rs41638273 | 1.08E-05 | +++++ | 1.65E-01 | 3.16E-03 | 5.79E-03 | 9.03E-02 | 1.74E-01 | |
| rs109695205 | 1.61E-05 | +++++ | 3.02E-02 | 4.12E-02 | 1.09E-01 | 4.04E-02 | 2.35E-02 | |
| rs110161277 | 2.76E-05 | +++++ | 1.68E-01 | 5.24E-03 | 1.41E-02 | 1.50E-01 | 8.58E-02 | |
| rs110418027 | 4.34E-05 | −−−−− | 7.77E-02 | 8.29E-02 | 4.74E-02 | 3.92E-02 | 7.50E-02 | |
| rs43691372 | 4.47E-05 | +++++ | 1.74E-01 | 5.36E-02 | 6.36E-01 | 8.67E-03 | 4.65E-03 | |
| rs42820242 | 4.48E-05 | +++++ | 1.49E-01 | 2.74E-01 | 7.48E-02 | 1.06E-02 | 4.41E-02 | |
| ADG | rs386023985 | 4.32E-11 | −−−−− | 3.43E-01 | 3.82E-01 | 4.71E-04 | 1.16E-07 | 1.30E-03 |
| rs135897656 | 5.83E-10 | +++++ | 1.54E-01 | 1.70E-01 | 3.64E-07 | 1.19E-06 | 3.01E-01 | |
| rs136457441 | 2.93E-09 | +−+++ | 4.58E-01 | −9.64E-01 | 4.55E-06 | 1.88E-05 | 1.03E-02 | |
| rs110660154 | 1.08E-07 | +++++ | 3.69E-02 | −3.56E-01 | 5.20E-05 | 9.81E-02 | 5.63E-03 | |
| rs110780286 | 7.06E-06 | +++++ | 2.13E-01 | −9.79E-03 | 3.94E-01 | 9.86E-02 | 4.21E-04 | |
| rs382426807 | 7.70E-06 | +−+−+ | 5.84E-01 | −7.69E-01 | 1.50E-07 | 5.65E-06 | 6.85E-01 | |
| rs41595251 | 1.22E-05 | −−−−−− | 1.83E-01 | −9.94E-01 | 1.17E-01 | 4.61E-05 | 1.70E-02 | |
| rs110590483 | 2.21E-05 | −−−−− | 3.60E-01 | 1.69E-01 | 5.64E-03 | 5.12E-01 | 2.27E-03 | |
| rs109252082 | 3.72E-05 | +++++ | 8.27E-02 | 5.49E-01 | 1.26E-03 | 5.09E-01 | 1.07E-02 | |
| rs41592667 | 3.78E-05 | +++++ | 4.92E-01 | −6.02E-01 | 7.18E-03 | 8.14E-02 | 6.75E-03 | |
| rs41630180 | 4.18E-05 | −−−−− | 8.08E-01 | −1.87E-03 | 1.25E-01 | 6.19E-04 | 2.61E-01 | |
| rs41614223 | 4.39E-05 | −−−−− | 2.94E−01 | −7.84E-03 | 9.24E-04 | 6.27E-02 | 5.16E-01 | |
| rs137576435 | 4.52E-05 | −−−−−− | 3.95E-01 | 4.11E-01 | 2.03E-02 | 7.64E-01 | 1.66E-04 | |
| rs136789347 | 4.72E-05 | −−−−−− | 1.99E-01 | 6.66E-01 | 1.35E-01 | 1.77E-04 | 5.03E-02 | |
| FI | IDBV32000008978 | 1.33E-05 | ++++− | 6.00E−03 | 1.69E-03 | 7.68E-03 | 3.35E-02 | 8.59E-01 |
| rs55617218 | 2.61E-05 | +−−−− | 4.22E-01 | 1.75E-01 | 2.83E-01 | 1.92E-04 | 8.14E-03 | |
| rs109691080 | 4.43E-05 | −++++ | 6.89E-01 | 4.45E-01 | 1.41E-04 | 1.88E-01 | 6.53E-03 |
SNP: single nucleotide polymorphism; RFI: residual feed intake; ADG: average daily gain; Direction of effect: direction of effect of the Illumina A allele; FI: feed intake; AA: Aberdeen Angus; BB: Belgian Blue; CH: Charolais; LM: Limousin; SI: Simmental.