Table 2.

Genomic prediction values obtained for SH using decreasing marker densities.

Method	Approach	SNP N	Accuracy	Approach	SNP N	Accuracy
PBLUP	Pedigree	–	0.47
GBLUP	MAF 0.01	16,076	0.6	Random	16,076	0.6
GBLUP	MAF 0.05	13,337	0.59	Random	15,000	0.59
GBLUP	MAF 0.1	10,167	0.59	Random	10,000	0.59
GBLUP	MAF 0.15	7,738	0.59	Random	5,000	0.57
GBLUP	MAF 0.25	4,768	0.58	Random	2,500	0.59
GBLUP	MAF 0.35	2,664	0.57	Random	1,000	0.56
GBLUP	MAF 0.45	898	0.55	Random	100	0.52
GBLUP	MAF 0.475	474	0.52